Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RKQ56_RS18045 Genome accession   NZ_CP134583
Coordinates   3728025..3729155 (+) Length   376 a.a.
NCBI ID   WP_001984977.1    Uniprot ID   D0CEJ5
Organism   Acinetobacter baumannii strain XH1032     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3723025..3734155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ56_RS18020 (RKQ56_18045) - 3723285..3723491 (-) 207 WP_000182542.1 hypothetical protein -
  RKQ56_RS18025 (RKQ56_18050) - 3723545..3725659 (-) 2115 WP_032031262.1 TonB-dependent copper receptor -
  RKQ56_RS18030 (RKQ56_18055) - 3725732..3726160 (-) 429 WP_000231981.1 DUF2946 family protein -
  RKQ56_RS18035 (RKQ56_18060) def 3726197..3726727 (-) 531 WP_001196539.1 peptide deformylase -
  RKQ56_RS18040 (RKQ56_18065) tsaP 3726850..3728004 (+) 1155 WP_032031263.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  RKQ56_RS18045 (RKQ56_18070) dprA 3728025..3729155 (+) 1131 WP_001984977.1 DNA-processing protein DprA Machinery gene
  RKQ56_RS18050 (RKQ56_18075) - 3729206..3729775 (+) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  RKQ56_RS18055 (RKQ56_18080) - 3730167..3731087 (-) 921 WP_000084546.1 DMT family transporter -
  RKQ56_RS18060 (RKQ56_18085) - 3731193..3731843 (-) 651 WP_001984979.1 TetR/AcrR family transcriptional regulator -
  RKQ56_RS18065 (RKQ56_18090) - 3731980..3733194 (+) 1215 WP_000372838.1 MFS transporter -
  RKQ56_RS18070 (RKQ56_18095) - 3733216..3733980 (+) 765 WP_000786954.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41914.43 Da        Isoelectric Point: 6.5815

>NTDB_id=881858 RKQ56_RS18045 WP_001984977.1 3728025..3729155(+) (dprA) [Acinetobacter baumannii strain XH1032]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGNCEKATQPDGLAKWSSLGLHANHLKRVNEFQTPQGQAQFEQLVQQV
RQHTDFILTPDDSGYPTQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASTHQRTIAVTGTGLDTTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQIIEDLALPTQWQSQQQNQTEEANTNTPEIP
EHLIDLYQSLDWVGQNIDQLVVHHNIPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=881858 RKQ56_RS18045 WP_001984977.1 3728025..3729155(+) (dprA) [Acinetobacter baumannii strain XH1032]
ATGCTCACTCAACTTTCTTCACACCACTACCACACACTTAAAGTGTGGTATTTGGTGCAGCACTCTTTAGTCAGCTTTAA
AAAAATTATTGATTATTTTGGAAATTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTCTGGGGCTAC
ATGCTAATCACTTAAAGCGTGTAAACGAATTTCAAACGCCCCAAGGTCAGGCGCAGTTTGAACAACTTGTACAACAAGTT
CGTCAGCATACGGATTTTATTTTAACGCCGGATGACTCTGGCTATCCCACTCAATTACTTCCTTATACAGATCACCCACC
TATTATTTTTGGGAAAGGTCAAGCGCAAGCTTTATTGCAACCTCAAATTGCGATTGTCGGTAGCCGAAAGCCAAGCCCAC
ATGGACGACAGGTCGCTTATGATTTTGCTTACTACTTAAGTGAAAAGGGCTTTTTCATTAGTAGTGGTCTGGCTTATGGC
ATTGATGAAGCCGCTCATCAAGGTGCATCTACTCATCAACGTACCATTGCAGTGACGGGTACGGGCTTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTCAAAACGGCGCCATTATTACTGAGTTTTTACCGGGTACAC
CGCCATTACAACAGCATTTTCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGTGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGTAAAACCGTATTCGCGATTCCGGGCCATATTTA
TAGCGAGTTTCATCAAGGATGCCATCAACTTATCCGTGAAGGTGCAATTTTAATCGACCATCCTGAACAGATTATTGAGG
ATCTTGCTTTACCAACCCAATGGCAAAGTCAGCAACAAAATCAAACTGAAGAAGCTAATACGAATACTCCAGAAATTCCT
GAGCATTTGATTGACCTTTATCAGTCTTTAGACTGGGTGGGACAAAATATTGACCAACTTGTAGTTCACCATAATATTCC
AGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(87-285)

DprA winged helix domain (DprA_WH)

(328-369)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D0CEJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

99.202

100

0.992
  dprA Acinetobacter baumannii D1279779

98.936

100

0.989
  dprA Acinetobacter baylyi ADP1

70.604

100

0.715
  dprA Vibrio cholerae strain A1552

43.202

88.032

0.38