Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RKQ58_RS17750 Genome accession   NZ_CP134579
Coordinates   3487195..3488331 (+) Length   378 a.a.
NCBI ID   WP_000957666.1    Uniprot ID   A0A062IFS2
Organism   Acinetobacter baumannii strain XH1034     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3482195..3493331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ58_RS17725 (RKQ58_17725) - 3482455..3482661 (-) 207 WP_000182542.1 hypothetical protein -
  RKQ58_RS17730 (RKQ58_17730) - 3482715..3484829 (-) 2115 WP_032022913.1 TonB-dependent copper receptor -
  RKQ58_RS17735 (RKQ58_17735) - 3484902..3485330 (-) 429 WP_000231981.1 DUF2946 family protein -
  RKQ58_RS17740 (RKQ58_17740) def 3485367..3485897 (-) 531 WP_001196539.1 peptide deformylase -
  RKQ58_RS17745 (RKQ58_17745) tsaP 3486020..3487174 (+) 1155 WP_000755273.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  RKQ58_RS17750 (RKQ58_17750) dprA 3487195..3488331 (+) 1137 WP_000957666.1 DNA-processing protein DprA Machinery gene
  RKQ58_RS17755 (RKQ58_17755) - 3488376..3488945 (+) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  RKQ58_RS17760 (RKQ58_17760) - 3489337..3490257 (-) 921 WP_001994180.1 DMT family transporter -
  RKQ58_RS17765 (RKQ58_17765) - 3490363..3490521 (-) 159 Protein_3283 TetR/AcrR family transcriptional regulator -
  RKQ58_RS17770 (RKQ58_17770) - 3490515..3490646 (+) 132 Protein_3284 glutathione peroxidase -
  RKQ58_RS17775 (RKQ58_17775) - 3490792..3491391 (+) 600 WP_000757144.1 hypothetical protein -
  RKQ58_RS17780 (RKQ58_17780) - 3491453..3491872 (-) 420 WP_000224542.1 F0F1 ATP synthase subunit epsilon -
  RKQ58_RS17785 (RKQ58_17785) atpD 3491890..3493284 (-) 1395 WP_000094481.1 F0F1 ATP synthase subunit beta -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 42132.72 Da        Isoelectric Point: 6.4547

>NTDB_id=881762 RKQ58_RS17750 WP_000957666.1 3487195..3488331(+) (dprA) [Acinetobacter baumannii strain XH1034]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGNCEKATQPDGLAKWSSLGLHANHLKRVSEFQTPQGQTQFEQLVQQV
VQHTDFILTPDDSGYPTQLLPYTDYPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDTTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQIIEDLALPTQWQSQQQNQTEEANTNTPEIP
EHLIDLYQSLDWVGQNIDQLVVHHNIPVSELTSSLMELELLGLCMQQSGLYLRCRSLY

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=881762 RKQ58_RS17750 WP_000957666.1 3487195..3488331(+) (dprA) [Acinetobacter baumannii strain XH1034]
ATGCTCACTCAACTTTCTTCACACCACTACCACACACTTAAAGTGTGGTATTTGGTGCAGCACTCTTTAGTCAGCTTTAA
AAAAATTATTGATTATTTTGGAAATTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTCTAGGGCTAC
ATGCTAATCACTTAAAACGTGTAAGCGAGTTTCAAACGCCCCAAGGTCAGACGCAGTTTGAACAACTTGTACAACAAGTT
GTTCAACATACGGATTTTATTTTAACGCCGGATGACTCTGGCTATCCCACTCAATTACTTCCTTATACAGATTATCCACC
TATTATTTTTGGGAAAGGTCAAGCGCAAGCTTTATTGCAACCTCAGATTGCGATTGTCGGTAGCCGAAAACCAAGCCCAC
ATGGACGACAGGTCGCTTATGATTTTGCTTATTACTTAAGTGAAAAGGGCTTTTTCATTAGTAGTGGTCTGGCTTATGGC
ATTGATGAAGCCGCTCATCAAGGTGCATCTGCTCATCAACGTACCATTGCAGTGACGGGTACGGGCTTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTCAAAACGGCGCCATTATTACTGAGTTTTTACCGGGTACAC
CGCCATTACAACAGCATTTTCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGTGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGTAAAACCGTATTCGCGATTCCGGGCCATATTTA
TAGCGAGTTTCATCAAGGATGCCATCAACTTATTCGTGAAGGTGCAATTTTAATCGACCATCCTGAACAGATTATTGAGG
ATCTTGCTTTACCAACCCAATGGCAAAGTCAGCAACAAAATCAAACTGAAGAGGCTAATACGAATACTCCAGAAATTCCT
GAGCATCTGATTGACCTTTATCAGTCTTTAGACTGGGTAGGACAAAATATTGACCAGCTTGTAGTTCACCATAATATTCC
AGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTTGTATTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(328-369)

DNA recombination-mediator protein A (DNA_processg_A)

(87-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062IFS2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

98.138

99.471

0.976
  dprA Acinetobacter baumannii strain A118

97.872

99.471

0.974
  dprA Acinetobacter baylyi ADP1

70.496

100

0.714
  dprA Vibrio cholerae strain A1552

43.202

87.566

0.378