Detailed information NTG0881517

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: RKQ63_RS04330
• Genome accession: NZ_CP134565
• Coordinates: 919906..921024 (-)
• Length: 372 a.a.
• NCBI ID: WP_000347039.1
• Uniprot ID: A0A9P2XLL8
• Organism: Acinetobacter baumannii strain XH1039
• Function: mediate the depolymerization of the type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 914906..926024

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RKQ63_RS04300 (RKQ63_04305)	-	915735..916583 (+)	849	WP_000336548.1	class II glutamine amidotransferase	-
RKQ63_RS04305 (RKQ63_04310)	-	916836..917291 (+)	456	WP_000782976.1	bacteriohemerythrin	-
RKQ63_RS04310 (RKQ63_04315)	-	917444..918511 (+)	1068	WP_002019572.1	hypothetical protein	-
RKQ63_RS04315 (RKQ63_04320)	-	918511..918834 (+)	324	WP_000442587.1	RnfH family protein	-
RKQ63_RS04320 (RKQ63_04325)	-	918889..919287 (-)	399	WP_001170994.1	outer membrane protein assembly factor BamE	-
RKQ63_RS04325 (RKQ63_04330)	fur	919399..919836 (+)	438	WP_001122847.1	ferric iron uptake transcriptional regulator	-
RKQ63_RS04330 (RKQ63_04335)	pilU	919906..921024 (-)	1119	WP_000347039.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
RKQ63_RS04335 (RKQ63_04340)	pilT	921052..922089 (-)	1038	WP_000355489.1	type IV pilus twitching motility protein PilT	Machinery gene
RKQ63_RS04340 (RKQ63_04345)	-	922216..922908 (+)	693	WP_001108512.1	YggS family pyridoxal phosphate-dependent enzyme	-

Sequence

Protein

• Length: 372 a.a.
• Molecular weight: 41933.13 Da
• Isoelectric Point: 6.6944

>NTDB_id=881517 RKQ63_RS04330 WP_000347039.1 919906..921024(-) (pilU) [Acinetobacter baumannii strain XH1039]
MDFNDLLNLMVEKKSSDLFITDGVAPSMKINGQIVPISKNSLSGEVIGQLLHSIMSEKQRREFAETRECNFAIMNREKTA
RFRVSAFQQRDMPGMVLRRIETKIPSIDDLQLPPVLKDLSMTKRGIIIFVGATGTGKSTSLASMISHRNHNSKGHIITIE
DPIEFIHEHAGCIITQREVGIDTDSFEIALKNTLRQAPDVILIGEIRSREVMDYAIGFAETGHLVLATMHANNANQALDR
IIHFFESDRHSQLYMDLSLNLKAMIAQQLIPTPDGNSRRAAIEILINSPLISDYIRKGEIHEIKDLMKRSRELGMQTFDQ
ALFDLYKAGQITYKDALKHADSPNDLRLTIKLADEGPDQLSDGKQHLTFDRQ

Nucleotide

• Length: 1119 bp

>NTDB_id=881517 RKQ63_RS04330 WP_000347039.1 919906..921024(-) (pilU) [Acinetobacter baumannii strain XH1039]
ATGGATTTTAATGACTTGCTCAACCTGATGGTTGAAAAAAAATCTTCCGATCTCTTTATTACAGATGGCGTTGCGCCCTC
TATGAAGATTAACGGGCAAATTGTTCCAATTTCAAAAAACAGTCTTTCTGGGGAAGTGATTGGTCAACTGTTACATTCCA
TCATGAGTGAAAAACAACGCAGAGAATTTGCAGAAACTCGTGAATGTAACTTTGCCATTATGAACCGTGAAAAAACGGCG
CGTTTTCGTGTCAGTGCTTTTCAGCAGCGCGACATGCCGGGCATGGTACTACGTCGTATTGAAACCAAGATTCCTTCAAT
TGATGACTTGCAGTTACCGCCTGTACTTAAAGATTTATCGATGACCAAACGCGGCATTATTATTTTTGTAGGCGCGACAG
GCACAGGTAAATCTACTTCACTGGCTTCAATGATCAGCCATCGTAACCATAACTCTAAGGGCCATATCATTACCATTGAA
GACCCGATTGAGTTTATTCACGAACATGCAGGTTGCATCATTACTCAGCGTGAAGTCGGGATCGATACCGACTCATTTGA
AATTGCCTTGAAAAATACACTACGACAAGCGCCGGATGTGATCTTAATTGGTGAGATCCGTTCTCGTGAAGTCATGGACT
ACGCGATTGGCTTTGCTGAAACAGGCCATCTTGTATTAGCTACCATGCACGCTAACAACGCCAACCAAGCGCTCGACCGT
ATTATTCACTTTTTTGAAAGTGACCGTCATAGTCAGCTTTACATGGACTTGTCACTTAACTTAAAGGCAATGATTGCGCA
GCAGCTCATTCCAACACCAGATGGTAATTCACGCCGTGCAGCAATTGAGATTTTAATTAACTCACCATTAATTTCAGACT
ACATCCGTAAAGGTGAAATTCATGAAATTAAAGATTTGATGAAACGCTCACGTGAACTTGGTATGCAGACCTTTGACCAA
GCTTTATTTGATTTATATAAAGCTGGTCAAATTACCTACAAAGATGCACTTAAACATGCTGACTCACCGAACGATTTACG
TTTAACCATTAAACTTGCAGATGAAGGTCCTGATCAATTATCAGACGGGAAACAGCATTTAACTTTTGACCGCCAGTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (31-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Acinetobacter baylyi ADP1	75.926	100	0.772
pilU	Pseudomonas stutzeri DSM 10701	69.565	98.925	0.688
pilU	Vibrio cholerae strain A1552	53.243	99.462	0.53
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	42.486	93.011	0.395