Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   RKQ65_RS18620 Genome accession   NZ_CP134562
Coordinates   3775613..3776062 (-) Length   149 a.a.
NCBI ID   WP_020753494.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1041     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3770613..3781062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ65_RS18600 (RKQ65_18650) bfr 3770922..3771386 (+) 465 WP_000678123.1 bacterioferritin -
  RKQ65_RS18605 (RKQ65_18655) - 3771427..3773055 (-) 1629 WP_001195768.1 PglL family O-oligosaccharyltransferase -
  RKQ65_RS18610 (RKQ65_18660) - 3773156..3774124 (-) 969 WP_032495426.1 IS30 family transposase -
  RKQ65_RS18615 (RKQ65_18665) - 3774252..3775562 (-) 1311 WP_020753493.1 O-antigen ligase -
  RKQ65_RS18620 (RKQ65_18670) pilA 3775613..3776062 (-) 450 WP_020753494.1 pilin Machinery gene
  RKQ65_RS18625 (RKQ65_18675) - 3776404..3776964 (-) 561 WP_020753495.1 TPM domain-containing protein -
  RKQ65_RS18630 (RKQ65_18680) - 3776958..3778040 (-) 1083 WP_001246384.1 YgcG family protein -
  RKQ65_RS18635 (RKQ65_18685) - 3778062..3778652 (-) 591 WP_000846931.1 LemA family protein -
  RKQ65_RS18640 (RKQ65_18690) - 3778784..3779671 (-) 888 WP_001017323.1 metal-dependent hydrolase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 15140.23 Da        Isoelectric Point: 8.4527

>NTDB_id=881443 RKQ65_RS18620 WP_020753494.1 3775613..3776062(-) (pilA) [Acinetobacter baumannii strain XH1041]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQSYIAKSQASEAFTLADGLKTTIATNLQAGTCFANGSAAATATDSVTGKY
GKAEILADTTSGSNGCGIKYTFNASNVSAKLKNGVIGIAVSENGVLKKSTVTATTSTLNEYLPQSFSGS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=881443 RKQ65_RS18620 WP_020753494.1 3775613..3776062(-) (pilA) [Acinetobacter baumannii strain XH1041]
ATGAATGCACAAAAAGGTTTTACATTAATCGAACTCATGATCGTGGTTGCCATTATTGGTATTTTGGCAGCAATTGCGAT
TCCTGCTTATCAAAGTTATATTGCAAAATCTCAAGCTTCTGAAGCATTTACATTAGCAGATGGTCTAAAAACAACTATTG
CTACTAACTTGCAAGCTGGAACATGTTTCGCTAATGGTTCAGCTGCAGCAACAGCAACTGATTCAGTTACGGGTAAATAT
GGTAAAGCAGAAATTTTAGCAGATACAACGTCTGGTAGTAATGGATGTGGTATTAAATATACATTTAATGCATCAAATGT
ATCTGCTAAATTGAAAAACGGAGTTATTGGTATTGCTGTAAGTGAAAATGGTGTATTGAAGAAATCTACAGTAACAGCCA
CAACTTCTACATTAAATGAATATTTACCACAATCTTTCTCTGGTTCTTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-145)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Acinetobacter nosocomialis M2

67.785

100

0.678
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

40

100

0.403
  pilA Vibrio cholerae strain A1552

40

100

0.403
  pilA Vibrio cholerae C6706

40

100

0.403