Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RKQ65_RS05515 Genome accession   NZ_CP134562
Coordinates   1089656..1089982 (+) Length   108 a.a.
NCBI ID   WP_002126519.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1041     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1084656..1094982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ65_RS05480 (RKQ65_05470) - 1085050..1085265 (+) 216 WP_020752871.1 hypothetical protein -
  RKQ65_RS05485 (RKQ65_05475) - 1085269..1085487 (+) 219 WP_002124817.1 helix-turn-helix domain-containing protein -
  RKQ65_RS05490 (RKQ65_05480) - 1085484..1085990 (+) 507 WP_020752872.1 BRO family protein -
  RKQ65_RS05495 (RKQ65_05485) - 1085983..1086351 (+) 369 WP_038346496.1 hypothetical protein -
  RKQ65_RS05500 (RKQ65_05490) - 1086361..1086693 (+) 333 WP_038346497.1 hypothetical protein -
  RKQ65_RS05505 (RKQ65_05495) - 1086686..1086979 (+) 294 WP_020752874.1 hypothetical protein -
  RKQ65_RS05510 (RKQ65_05500) - 1086972..1089401 (+) 2430 WP_038346498.1 DUF927 domain-containing protein -
  RKQ65_RS05515 (RKQ65_05505) ssb 1089656..1089982 (+) 327 WP_002126519.1 single-stranded DNA-binding protein Machinery gene
  RKQ65_RS05520 (RKQ65_05510) - 1092778..1093107 (-) 330 WP_031958377.1 helix-turn-helix domain-containing protein -
  RKQ65_RS05525 (RKQ65_05515) - 1093244..1094413 (+) 1170 WP_046025189.1 MFS transporter -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12234.94 Da        Isoelectric Point: 10.2394

>NTDB_id=881422 RKQ65_RS05515 WP_002126519.1 1089656..1089982(+) (ssb) [Acinetobacter baumannii strain XH1041]
MPNVNKVTVMGVLGRDPETKQFPNGGSVTTFSVATTEFWKDKTTGERKEATEWHRITTSNRLAEIASKYLKKGGKVYIEG
SLRTRKWKDSKGAEKEITEIRADEMQLL

Nucleotide


Download         Length: 327 bp        

>NTDB_id=881422 RKQ65_RS05515 WP_002126519.1 1089656..1089982(+) (ssb) [Acinetobacter baumannii strain XH1041]
ATGCCAAACGTAAACAAAGTAACTGTGATGGGTGTACTAGGTCGTGACCCTGAAACTAAACAATTTCCCAACGGCGGAAG
CGTTACCACATTCAGCGTTGCAACTACTGAGTTTTGGAAAGACAAGACTACAGGCGAGCGTAAAGAAGCTACAGAGTGGC
ATAGAATCACCACCAGCAACCGTTTAGCCGAGATTGCCAGTAAGTACCTCAAGAAAGGCGGAAAGGTGTATATCGAAGGC
TCATTGCGTACAAGGAAGTGGAAGGACAGCAAAGGGGCGGAAAAGGAAATAACCGAGATTCGAGCAGATGAGATGCAATT
GCTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

55.556

100

0.556
  ssb Neisseria gonorrhoeae MS11

51.887

98.148

0.509
  ssb Neisseria meningitidis MC58

51.887

98.148

0.509
  ssb Vibrio cholerae strain A1552

54.639

89.815

0.491