Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RKQ68_RS17080 Genome accession   NZ_CP134555
Coordinates   3512656..3513786 (+) Length   376 a.a.
NCBI ID   WP_002040490.1    Uniprot ID   A0A241ZJN0
Organism   Acinetobacter baumannii strain XH1044     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3507656..3518786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ68_RS17055 (RKQ68_17065) - 3507916..3508122 (-) 207 WP_000182543.1 hypothetical protein -
  RKQ68_RS17060 (RKQ68_17070) - 3508176..3510290 (-) 2115 WP_391485382.1 TonB-dependent copper receptor -
  RKQ68_RS17065 (RKQ68_17075) - 3510363..3510791 (-) 429 WP_000231981.1 DUF2946 family protein -
  RKQ68_RS17070 (RKQ68_17080) def 3510828..3511358 (-) 531 WP_001196539.1 peptide deformylase -
  RKQ68_RS17075 (RKQ68_17085) tsaP 3511481..3512635 (+) 1155 WP_002061923.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  RKQ68_RS17080 (RKQ68_17090) dprA 3512656..3513786 (+) 1131 WP_002040490.1 DNA-processing protein DprA Machinery gene
  RKQ68_RS17085 (RKQ68_17095) - 3513837..3514406 (+) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  RKQ68_RS17090 (RKQ68_17100) - 3514799..3515719 (-) 921 WP_000084546.1 DMT family transporter -
  RKQ68_RS17095 (RKQ68_17105) - 3515825..3516475 (-) 651 WP_085943488.1 TetR/AcrR family transcriptional regulator -
  RKQ68_RS17100 (RKQ68_17110) - 3516612..3517826 (+) 1215 WP_005135894.1 MFS transporter -
  RKQ68_RS17105 (RKQ68_17115) - 3517848..3518612 (+) 765 WP_005135895.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41886.41 Da        Isoelectric Point: 6.4547

>NTDB_id=881305 RKQ68_RS17080 WP_002040490.1 3512656..3513786(+) (dprA) [Acinetobacter baumannii strain XH1044]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGNCEKATQPDGLAKWSSLGLHANHLKRVSEFQTPQGQTQFEQLVQQV
VQHTDFILTPDDSGYPTQLLPYTDYPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASTHQRTIAVTGTGLDTTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQIIEDLALPTQWQSQQQNQTEEANTNTPEIP
EHLIDLYQSLDWVGQNIDQLVVHHNIPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=881305 RKQ68_RS17080 WP_002040490.1 3512656..3513786(+) (dprA) [Acinetobacter baumannii strain XH1044]
ATGCTCACTCAACTTTCTTCACACCACTACCACACACTTAAAGTGTGGTATTTGGTGCAGCACTCTTTAGTCAGCTTTAA
AAAAATTATTGATTATTTTGGAAATTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTCTAGGGCTAC
ATGCTAATCACTTAAAACGTGTAAGCGAGTTTCAAACGCCCCAAGGTCAGACGCAGTTTGAACAACTTGTACAACAAGTT
GTTCAACATACGGATTTTATTTTAACGCCGGATGACTCAGGCTATCCCACTCAATTACTTCCTTATACAGATTATCCACC
TATTATTTTTGGGAAAGGTCAAGCACAAGCTTTATTGCAACCTCAGATTGCGATTGTCGGTAGCCGAAAACCAAGCCCAC
ATGGACGACAGGTCGCTTATGATTTTGCTTACTACTTAAGTGAAAAGGGCTTTTTCATTAGTAGTGGTCTGGCTTATGGC
ATTGATGAAGCCGCTCATCAAGGTGCATCTACTCATCAACGTACCATTGCAGTGACGGGTACGGGCTTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTCAAAACGGCGCCATTATTACTGAGTTTTTACCGGGTACAC
CGCCATTACAACAGCATTTTCCACGGAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGTGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGTAAAACCGTATTCGCGATTCCGGGCCATATTTA
TAGCGAGTTTCATCAAGGATGCCATCAACTTATCCGTGAAGGTGCAATTTTAATCGACCATCCTGAACAAATTATTGAGG
ATCTTGCTTTACCAACCCAATGGCAAAGTCAGCAACAAAATCAAACTGAAGAAGCTAATACGAATACTCCAGAAATTCCT
GAGCACTTGATTGATCTTTATCAGTCTTTAGACTGGGTAGGACAAAATATTGACCAACTTGTAGTTCACCATAATATTCC
AGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(87-285)

DprA winged helix domain (DprA_WH)

(328-369)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A241ZJN0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

98.138

100

0.981
  dprA Acinetobacter baumannii D1279779

97.872

100

0.979
  dprA Acinetobacter baylyi ADP1

70.604

100

0.715
  dprA Vibrio cholerae strain A1552

43.202

88.032

0.38