Detailed information NTG0880923

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RKQ76_RS16845
• Genome accession: NZ_CP134540
• Coordinates: 3523696..3524556 (-)
• Length: 286 a.a.
• NCBI ID: WP_001152285.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain XH1055
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3518696..3529556

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RKQ76_RS16820 (RKQ76_16830)	-	3519587..3520897 (+)	1311	WP_000753294.1	tetratricopeptide repeat protein	-
RKQ76_RS16825 (RKQ76_16835)	-	3520974..3521300 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
RKQ76_RS16830 (RKQ76_16840)	rlmB	3521402..3522151 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
RKQ76_RS16835 (RKQ76_16845)	-	3522187..3523101 (+)	915	WP_000075011.1	DMT family transporter	-
RKQ76_RS16840 (RKQ76_16850)	coaE	3523098..3523694 (-)	597	WP_000874125.1	dephospho-CoA kinase	-
RKQ76_RS16845 (RKQ76_16855)	pilD	3523696..3524556 (-)	861	WP_001152285.1	A24 family peptidase	Machinery gene
RKQ76_RS16850 (RKQ76_16860)	pilC	3524556..3525782 (-)	1227	WP_000279216.1	type II secretion system F family protein	Machinery gene
RKQ76_RS16855 (RKQ76_16865)	pilB	3525812..3527524 (-)	1713	WP_001274990.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RKQ76_RS16860 (RKQ76_16870)	tpiA	3527815..3528609 (+)	795	WP_000016939.1	triose-phosphate isomerase	-
RKQ76_RS16865 (RKQ76_16875)	secG	3528622..3528951 (+)	330	WP_000555572.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32153.54 Da
• Isoelectric Point: 7.1042

>NTDB_id=880923 RKQ76_RS16845 WP_001152285.1 3523696..3524556(-) (pilD) [Acinetobacter baumannii strain XH1055]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHERLTLNKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLILTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
IGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=880923 RKQ76_RS16845 WP_001152285.1 3523696..3524556(-) (pilD) [Acinetobacter baumannii strain XH1055]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCAATTATTGATCATGAGAGGTTAACTTTAAATAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGCCATTGCCAACACCCGATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTCATCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
ATTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.951	100	0.99
pilD	Acinetobacter nosocomialis M2	97.902	100	0.979
pilD	Vibrio cholerae strain A1552	52.941	95.105	0.503
pilD	Vibrio campbellii strain DS40M4	52.03	94.755	0.493
pilD	Neisseria gonorrhoeae MS11	48.485	92.308	0.448