Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   WMY90_RS05675 Genome accession   NZ_CP150875
Coordinates   1107728..1108471 (-) Length   247 a.a.
NCBI ID   WP_011226469.1    Uniprot ID   Q5M2Y9
Organism   Streptococcus thermophilus strain TCI125     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1102728..1113471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WMY90_RS05645 (WMY90_05645) - 1102999..1103943 (-) 945 WP_022096500.1 TIGR01212 family radical SAM protein -
  WMY90_RS05650 (WMY90_05650) sepM 1104028..1105104 (-) 1077 WP_022096499.1 SepM family pheromone-processing serine protease Regulator
  WMY90_RS05655 (WMY90_05655) coaD 1105082..1105579 (-) 498 WP_022096498.1 pantetheine-phosphate adenylyltransferase -
  WMY90_RS05660 (WMY90_05660) rsmD 1105613..1106212 (-) 600 Protein_1112 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  WMY90_RS05665 (WMY90_05665) trxB 1106303..1107256 (-) 954 WP_255136104.1 thioredoxin-disulfide reductase -
  WMY90_RS05670 (WMY90_05670) - 1107289..1107513 (-) 225 WP_022096496.1 DUF4059 family protein -
  WMY90_RS05675 (WMY90_05675) amiE 1107728..1108471 (-) 744 WP_011226469.1 amino acid ABC transporter ATP-binding protein Regulator
  WMY90_RS05680 (WMY90_05680) - 1108471..1109217 (-) 747 WP_095559509.1 amino acid ABC transporter permease -
  WMY90_RS05685 (WMY90_05685) - 1109605..1110435 (-) 831 WP_014608653.1 transporter substrate-binding domain-containing protein -
  WMY90_RS05690 (WMY90_05690) - 1110895..1111128 (-) 234 WP_002947030.1 hypothetical protein -
  WMY90_RS05695 (WMY90_05695) dinB 1111426..1112529 (-) 1104 WP_022096495.1 DNA polymerase IV -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27763.89 Da        Isoelectric Point: 5.4718

>NTDB_id=880872 WMY90_RS05675 WP_011226469.1 1107728..1108471(-) (amiE) [Streptococcus thermophilus strain TCI125]
MISIKNLTKEFSGQKVLDGIDIDIEKGEVVALVGASGAGKSTILRCLNYLEQPDSGTIAIDDFKVDFETITKEQILTLRR
KLAMVFQQFNLFERRTALDNVKEGLKIVKKLSDDEATKIAKEELTKVGLSNRENYYPRHLSGGQKQRVALARALAMRPDV
LLLDEPTSALDPELVGEVEKSIVDAAKSGQTMILVSHDMNFIYQVADKVLFLEKGHILEQGTPDEIFNHPKEERTKEFFA
SYSKQYL

Nucleotide


Download         Length: 744 bp        

>NTDB_id=880872 WMY90_RS05675 WP_011226469.1 1107728..1108471(-) (amiE) [Streptococcus thermophilus strain TCI125]
ATGATTAGTATCAAAAATTTGACCAAGGAATTTTCAGGACAAAAGGTTCTCGATGGCATCGATATTGACATTGAAAAAGG
TGAAGTTGTGGCTCTTGTTGGTGCCTCTGGTGCAGGGAAGTCGACTATCCTTCGTTGCTTGAACTATTTGGAACAACCTG
ATTCTGGTACTATTGCCATTGATGATTTCAAGGTGGATTTTGAAACAATTACCAAGGAGCAAATCCTTACTCTTCGTCGT
AAGTTGGCCATGGTGTTCCAACAGTTCAACCTCTTTGAACGTCGTACAGCCTTGGATAATGTTAAGGAAGGTCTCAAGAT
TGTTAAGAAACTTTCTGACGACGAAGCTACCAAGATTGCTAAAGAAGAGCTCACTAAGGTTGGGCTTTCTAATCGTGAAA
ATTACTACCCACGTCACTTGTCGGGTGGTCAAAAGCAACGTGTGGCTTTGGCTCGTGCCCTTGCAATGAGGCCTGATGTG
CTCTTGCTTGACGAACCAACATCTGCCCTTGACCCTGAGTTGGTTGGTGAGGTTGAAAAATCAATCGTAGATGCGGCTAA
ATCAGGTCAAACCATGATTTTGGTCAGTCACGACATGAACTTTATTTATCAAGTGGCTGACAAGGTGCTTTTCCTTGAAA
AAGGTCATATCCTTGAACAAGGAACACCTGATGAAATCTTTAACCATCCAAAAGAAGAGCGAACAAAAGAATTCTTCGCT
TCTTATTCAAAACAATATCTTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M2Y9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

33.962

100

0.364