Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RLO20_RS01260 Genome accession   NZ_CP134538
Coordinates   239204..240565 (+) Length   453 a.a.
NCBI ID   WP_043030409.1    Uniprot ID   -
Organism   Streptococcus equi subsp. equi strain XJ5012     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 234204..245565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLO20_RS01245 (RLO20_01245) - 235764..237560 (+) 1797 WP_012678951.1 ABC transporter ATP-binding protein -
  RLO20_RS01250 (RLO20_01250) - 237722..238489 (+) 768 WP_012678952.1 epoxyqueuosine reductase QueH -
  RLO20_RS01255 (RLO20_01255) - 238691..239137 (+) 447 WP_012678953.1 dUTP diphosphatase -
  RLO20_RS01260 (RLO20_01260) radA 239204..240565 (+) 1362 WP_043030409.1 DNA repair protein RadA Machinery gene
  RLO20_RS01265 (RLO20_01265) - 240726..241004 (-) 279 WP_042356722.1 hypothetical protein -
  RLO20_RS01270 (RLO20_01270) - 241387..241893 (+) 507 WP_012678595.1 carbonic anhydrase -
  RLO20_RS01275 (RLO20_01275) - 242021..242734 (+) 714 WP_012678956.1 TIGR00266 family protein -
  RLO20_RS01280 (RLO20_01280) gltX 243336..244781 (+) 1446 WP_012678957.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49374.80 Da        Isoelectric Point: 7.0274

>NTDB_id=880836 RLO20_RS01260 WP_043030409.1 239204..240565(+) (radA) [Streptococcus equi subsp. equi strain XJ5012]
MAKKKARFICGECGYQSPKYLGRCPNCSAWSSFVEETEVKDVKNARISLTGEKSKPIKLKHINGVRYQRIQTEMNEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLADKGTVLYVSGEESAEQIKMRSDRLGQTDNDFYLYAETNMQAIRAEIE
AIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELLQLAKSNHIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFDMQSGGLVEVLNPSQVFLEERLDGATGSAVVVTMEGSRPILAEVQALVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEIGLTGDIR
RVTRIEQRINEAAKLGFTKLYAPKSSLQGIDLPKGIEVVGVTTVGEVLKAVFT

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=880836 RLO20_RS01260 WP_043030409.1 239204..240565(+) (radA) [Streptococcus equi subsp. equi strain XJ5012]
ATAGCTAAGAAAAAGGCGAGGTTTATCTGTGGAGAATGTGGCTATCAGTCACCCAAATATCTGGGGCGCTGCCCTAATTG
CTCTGCCTGGTCTTCCTTTGTAGAGGAGACAGAGGTCAAGGACGTCAAAAATGCCCGTATTAGCCTGACTGGAGAAAAAA
GTAAGCCCATCAAGCTAAAGCATATCAATGGCGTTCGCTACCAGCGTATCCAGACAGAGATGAATGAGTTCAATCGTGTG
CTGGGCGGTGGTGTTGTGCCGGGGAGCTTGGTTTTGATTGGTGGTGATCCTGGTATTGGTAAGTCAACGCTGCTCTTGCA
GGTTTCTATCCAGCTTGCGGATAAGGGAACTGTTTTATATGTCTCTGGAGAGGAATCGGCAGAGCAGATCAAGATGCGCA
GTGATCGTTTGGGACAGACCGACAATGATTTTTACCTCTATGCGGAGACCAATATGCAGGCTATTCGAGCAGAGATTGAA
GCCATTCAGCCGGATTTTTTGATTATTGATTCTATTCAGACGATCATGAGTCCGGAGATTTCGGGTGTTCAGGGCTCGGT
CAGTCAGGTTCGAGAGGTCACTGCTGAGCTGCTCCAGCTAGCTAAGTCTAATCATATTGCAACCTTTATTGTAGGACATG
TCACCAAGGAGGGCACCCTAGCAGGGCCTCGCATGCTGGAGCATATGGTTGATACGGTCCTTTATTTTGAGGGTGAGAGG
CATCATACCTTTCGTATCTTGCGAGCGGTTAAAAATCGTTTTGGCTCAACCAATGAGATTGGTATTTTTGACATGCAATC
AGGTGGGCTAGTGGAGGTCCTCAATCCCAGTCAGGTGTTCTTAGAGGAACGATTAGACGGCGCAACAGGCTCTGCTGTGG
TTGTCACCATGGAGGGGAGCAGACCGATTTTAGCTGAGGTGCAGGCCTTGGTGACACCGACTGTTTTTGGTAATGCTAGA
CGAACGACAACTGGGTTGGACTTTAATCGCGTCAGTCTGATTATGGCTGTCTTGGAAAAGCGATGTGGGCTGCTGCTACA
AAATCAAGATGCCTACCTCAAGTCAGCAGGCGGTGTGAAGCTAGATGAGCCTGCTATTGACTTGGCAGTTGCTGTGGCCA
TTGCCTCTAGCTACAAGGAAAAACCAACCAACCCTCAGGAGGCCTTTTTAGGAGAGATTGGCTTGACTGGTGATATTCGG
CGTGTGACCCGTATTGAGCAGCGGATTAATGAAGCCGCTAAGCTTGGCTTTACCAAGCTTTACGCTCCGAAAAGCTCATT
GCAGGGGATTGATCTGCCAAAAGGGATTGAGGTTGTTGGTGTGACGACAGTAGGAGAGGTCTTAAAGGCTGTCTTTACTT
AG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(61-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

84.513

99.779

0.843
  radA Streptococcus pneumoniae D39

84.513

99.779

0.843
  radA Streptococcus pneumoniae R6

84.513

99.779

0.843
  radA Streptococcus pneumoniae TIGR4

84.513

99.779

0.843
  radA Streptococcus mitis NCTC 12261

84.071

99.779

0.839
  radA Streptococcus mitis SK321

84.071

99.779

0.839
  radA Bacillus subtilis subsp. subtilis str. 168

61.369

100

0.614