Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RKV28_RS01820 Genome accession   NZ_CP134534
Coordinates   407040..407543 (+) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain KNIH_5618     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 402040..412543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKV28_RS01790 - 402980..403825 (+) 846 WP_001557587.1 ParB/RepB/Spo0J family partition protein -
  RKV28_RS01795 - 403979..404860 (+) 882 WP_000373073.1 mechanosensitive ion channel family protein -
  RKV28_RS01800 - 404890..405093 (+) 204 WP_000157348.1 DUF951 domain-containing protein -
  RKV28_RS01805 ychF 405105..406202 (+) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  RKV28_RS01810 - 406288..406479 (-) 192 WP_001052484.1 hypothetical protein -
  RKV28_RS01815 rpsF 406723..407019 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  RKV28_RS01820 ssbA 407040..407543 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  RKV28_RS01825 rpsR 407595..407837 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  RKV28_RS01830 - 408114..409052 (-) 939 WP_001817700.1 Abi family protein -
  RKV28_RS01835 - 409091..409804 (-) 714 Protein_365 tyrosine-type recombinase/integrase -
  RKV28_RS01840 selX 410010..410621 (+) 612 WP_000475325.1 staphylococcal enterotoxin-like toxin X -
  RKV28_RS01845 - 410990..411358 (+) 369 WP_000849163.1 YxeA family protein -
  RKV28_RS01850 - 411539..412111 (+) 573 WP_311157302.1 PepSY domain-containing protein -
  RKV28_RS01855 - 412248..412511 (-) 264 WP_001055897.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=880770 RKV28_RS01820 WP_000934799.1 407040..407543(+) (ssbA) [Staphylococcus aureus strain KNIH_5618]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=880770 RKV28_RS01820 WP_000934799.1 407040..407543(+) (ssbA) [Staphylococcus aureus strain KNIH_5618]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365