Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RKV26_RS01975 Genome accession   NZ_CP134532
Coordinates   398512..399015 (+) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain KNIH_6268     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 393512..404015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKV26_RS01945 - 394452..395297 (+) 846 WP_209205863.1 ParB/RepB/Spo0J family partition protein -
  RKV26_RS01950 - 395451..396332 (+) 882 WP_000373075.1 mechanosensitive ion channel family protein -
  RKV26_RS01955 - 396362..396565 (+) 204 WP_154283664.1 DUF951 domain-containing protein -
  RKV26_RS01960 ychF 396577..397674 (+) 1098 WP_001218728.1 redox-regulated ATPase YchF -
  RKV26_RS01965 - 397760..397951 (-) 192 WP_001052483.1 hypothetical protein -
  RKV26_RS01970 rpsF 398195..398491 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  RKV26_RS01975 ssbA 398512..399015 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  RKV26_RS01980 rpsR 399067..399309 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  RKV26_RS01985 - 399579..400517 (-) 939 WP_061739073.1 Abi family protein -
  RKV26_RS01990 - 400556..401281 (-) 726 Protein_357 tyrosine-type recombinase/integrase -
  RKV26_RS01995 - 401487..402098 (+) 612 WP_154283665.1 exotoxin beta-grasp domain-containing protein -
  RKV26_RS02000 - 402467..402835 (+) 369 WP_154283666.1 YxeA family protein -
  RKV26_RS02005 - 403015..403587 (+) 573 WP_000769722.1 PepSY domain-containing protein -
  RKV26_RS02010 - 403726..403989 (-) 264 WP_001055897.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=880684 RKV26_RS01975 WP_000934799.1 398512..399015(+) (ssbA) [Staphylococcus aureus strain KNIH_6268]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=880684 RKV26_RS01975 WP_000934799.1 398512..399015(+) (ssbA) [Staphylococcus aureus strain KNIH_6268]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365