Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   RHP75_RS17600 Genome accession   NZ_CP134499
Coordinates   3696104..3697441 (+) Length   445 a.a.
NCBI ID   WP_311089325.1    Uniprot ID   -
Organism   Pseudomonas sp. SG20056     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3691104..3702441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHP75_RS17575 (RHP75_17575) pgeF 3691184..3691909 (-) 726 WP_311089321.1 peptidoglycan editing factor PgeF -
  RHP75_RS17580 (RHP75_17580) rluD 3691957..3692931 (-) 975 WP_160085539.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RHP75_RS17585 (RHP75_17585) - 3693079..3694062 (+) 984 WP_311089322.1 outer membrane protein assembly factor BamD -
  RHP75_RS17590 (RHP75_17590) - 3694276..3694521 (+) 246 WP_311089323.1 PP0621 family protein -
  RHP75_RS17595 (RHP75_17595) pilS 3694511..3696100 (+) 1590 WP_311089324.1 ATP-binding protein Regulator
  RHP75_RS17600 (RHP75_17600) pilR 3696104..3697441 (+) 1338 WP_311089325.1 sigma-54 dependent transcriptional regulator Regulator
  RHP75_RS17605 (RHP75_17605) thiO 3697492..3698604 (-) 1113 WP_409079669.1 glycine oxidase ThiO -
  RHP75_RS17610 (RHP75_17610) - 3698710..3699252 (+) 543 WP_311089327.1 GspH/FimT family pseudopilin -
  RHP75_RS17615 (RHP75_17615) - 3699331..3699855 (+) 525 WP_311089328.1 GspH/FimT family pseudopilin -
  RHP75_RS17620 (RHP75_17620) pilV 3699870..3700433 (+) 564 WP_311089329.1 type IV pilus modification protein PilV -
  RHP75_RS17625 (RHP75_17625) - 3700430..3701254 (+) 825 WP_311089330.1 PilW family protein -
  RHP75_RS17630 (RHP75_17630) - 3701265..3701798 (+) 534 WP_311089331.1 PilX N-terminal domain-containing pilus assembly protein -
  RHP75_RS17635 (RHP75_17635) - 3701809..3702141 (+) 333 WP_311089332.1 hypothetical protein -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49765.39 Da        Isoelectric Point: 5.6384

>NTDB_id=880580 RHP75_RS17600 WP_311089325.1 3696104..3697441(+) (pilR) [Pseudomonas sp. SG20056]
MTRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAKEPFDLCLTDMRLPDGTGLELVQHILLRHPQVPVAM
ITAYGSLDTAINALKAGAFDFLTKPVDLGRLRELVAAALRLRSADGEELPVDSRLLGDSPPMKAMRKQILKLARSQAPVY
ISGESGSGKELVARLIHEQGSRGEQPFIPVNCGAIPTELMESEFFGHKKGSFTGAIEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQELIVDVRILCATHKDLAGEVAAGRFRQDLYYRLNVIELRVPALRERREDIALLADIM
LKRLADGTGLSPAKLDDDALEKLKSYRFPGNVRELENMLERAYTLCEDDRITTSDLRLADSMPISENGEANLAQIDNLED
YLEAIERKLIMQALEETRWNRTAAAQRLGLSFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=880580 RHP75_RS17600 WP_311089325.1 3696104..3697441(+) (pilR) [Pseudomonas sp. SG20056]
ATGACCCGCCAGAGAGCCTTGATCGTCGATGACGAACCCGATATTCGCGAACTCCTGGAAATCACCTTGGGGCGCATGAA
GCTCGACACCCGCAGCGCGCGCAACGTCAAGGAAGCCCGCGAATGGCTGGCCAAAGAGCCCTTCGACCTATGCCTCACTG
ACATGCGCCTGCCTGATGGTACCGGCCTGGAACTGGTGCAACATATTCTGCTGCGCCACCCACAAGTTCCGGTGGCAATG
ATCACCGCCTACGGCAGCCTGGATACCGCGATCAACGCCCTGAAAGCTGGCGCATTCGACTTTCTGACCAAGCCGGTGGA
TCTCGGTCGCCTGCGCGAACTGGTCGCTGCCGCCTTGCGCCTGCGCAGCGCCGATGGCGAAGAGCTGCCGGTGGACAGCC
GCTTGCTCGGCGACTCACCGCCGATGAAGGCCATGCGCAAACAGATCCTCAAACTCGCGCGCAGTCAGGCACCAGTGTAC
ATCAGCGGCGAATCTGGCAGCGGCAAGGAACTGGTCGCCCGCCTGATCCACGAGCAAGGTTCGCGCGGCGAGCAACCCTT
TATCCCGGTCAACTGCGGCGCCATCCCCACCGAACTGATGGAGAGCGAATTTTTCGGCCATAAAAAAGGCAGCTTTACGG
GCGCCATTGAAGACAAACAAGGCCTGTTTCAAGCAGCCAACGGCGGCACGCTGTTCCTCGATGAGGTCGCCGACCTGCCG
CTGCCGATGCAAGTTAAATTGCTACGCGCGATTCAGGAAAAAGCCGTACGCGCCGTCGGCGGGCAACAGGAGCTGATTGT
CGATGTGCGCATCCTCTGCGCCACCCACAAGGATCTGGCCGGTGAAGTCGCGGCCGGGCGCTTCCGCCAGGATTTGTACT
ACCGCCTCAACGTGATCGAACTGCGCGTGCCCGCCCTGCGCGAACGCCGCGAAGACATCGCCCTGCTGGCCGATATCATG
CTCAAGCGCCTGGCCGACGGCACCGGCCTCAGCCCGGCAAAGCTTGATGACGACGCACTGGAGAAGCTCAAGAGCTACCG
CTTCCCGGGCAACGTGCGCGAACTGGAGAACATGCTCGAGCGCGCCTACACCCTGTGCGAAGACGACCGCATCACCACCA
GCGACCTGCGCCTGGCCGACAGCATGCCCATAAGCGAAAACGGCGAAGCCAATCTAGCTCAGATCGACAACCTGGAAGAC
TACCTGGAAGCCATCGAACGCAAATTGATCATGCAAGCCCTGGAAGAAACCCGCTGGAACCGCACTGCCGCTGCACAGCG
CCTGGGCCTGAGCTTTCGCTCGATGCGTTATCGACTGAAGAAGCTCGGTATCGACTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

85.393

100

0.854
  pilR Acinetobacter baumannii strain A118

50.109

100

0.517
  luxO Vibrio cholerae strain A1552

37.723

100

0.38