Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   RHP75_RS17595 Genome accession   NZ_CP134499
Coordinates   3694511..3696100 (+) Length   529 a.a.
NCBI ID   WP_311089324.1    Uniprot ID   -
Organism   Pseudomonas sp. SG20056     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3689511..3701100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHP75_RS17575 (RHP75_17575) pgeF 3691184..3691909 (-) 726 WP_311089321.1 peptidoglycan editing factor PgeF -
  RHP75_RS17580 (RHP75_17580) rluD 3691957..3692931 (-) 975 WP_160085539.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RHP75_RS17585 (RHP75_17585) - 3693079..3694062 (+) 984 WP_311089322.1 outer membrane protein assembly factor BamD -
  RHP75_RS17590 (RHP75_17590) - 3694276..3694521 (+) 246 WP_311089323.1 PP0621 family protein -
  RHP75_RS17595 (RHP75_17595) pilS 3694511..3696100 (+) 1590 WP_311089324.1 ATP-binding protein Regulator
  RHP75_RS17600 (RHP75_17600) pilR 3696104..3697441 (+) 1338 WP_311089325.1 sigma-54 dependent transcriptional regulator Regulator
  RHP75_RS17605 (RHP75_17605) thiO 3697492..3698604 (-) 1113 WP_409079669.1 glycine oxidase ThiO -
  RHP75_RS17610 (RHP75_17610) - 3698710..3699252 (+) 543 WP_311089327.1 GspH/FimT family pseudopilin -
  RHP75_RS17615 (RHP75_17615) - 3699331..3699855 (+) 525 WP_311089328.1 GspH/FimT family pseudopilin -
  RHP75_RS17620 (RHP75_17620) pilV 3699870..3700433 (+) 564 WP_311089329.1 type IV pilus modification protein PilV -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58567.81 Da        Isoelectric Point: 9.0447

>NTDB_id=880579 RHP75_RS17595 WP_311089324.1 3694511..3696100(+) (pilS) [Pseudomonas sp. SG20056]
MNADFSLSGEQSRRILRLYHLYRLVIGITLALLISSDLDAQLLDMMHPTLFRNGSWLYLALNVLIIATVRRPKRLAQVFS
LALVDVILLCGLFYAAGGTPSGIGNLLIVAVAIANILLRGRIGLLIAAVAATGMIYLTFYLSLSRPAAAAQYVQAGALGA
LCFAAALFVQGLTRRLQVSESLAEQRAADVANLEALNALILQRMRTGILVLDELHRVLLANQGANHLLGHADLTGKILDP
HCPELIKRMQQWSHNPSLRPASLQAAPDGRVLQPSFIALQRGEHKHTLIFLDDISQIAQQAQQLKLASLGRLTAGIAHEI
RNPLGAISHAAQLLQESEELKGPDLRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRSSAAPGQ
TLHLETSSGSIQTRMDPHQLTQVLSNLVENGLRYSAQKNRHGQVWLKLFRDPESELPVLEVLDDGPGVSEEQLHHLFEPF
YTTENKGTGLGLYISRELCESNQARLDYKLREGGGSCLRITFAHPRKLS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=880579 RHP75_RS17595 WP_311089324.1 3694511..3696100(+) (pilS) [Pseudomonas sp. SG20056]
GTGAACGCTGATTTCTCCCTGAGCGGGGAGCAAAGCCGGCGAATCCTGCGGCTCTATCACCTCTACCGCCTGGTTATCGG
CATTACCCTGGCGCTGCTGATTTCCAGCGACCTCGACGCCCAACTGCTGGACATGATGCACCCGACGCTGTTTCGCAATG
GCAGCTGGCTGTATCTGGCGCTCAACGTCCTGATCATCGCCACCGTGCGCCGCCCCAAGCGCCTGGCGCAGGTATTCAGC
CTGGCACTGGTCGACGTGATTCTGCTCTGCGGCCTGTTCTATGCCGCCGGCGGCACACCCAGCGGCATCGGCAACCTGCT
GATTGTCGCCGTGGCGATTGCCAATATCCTGTTGCGCGGACGTATCGGCCTACTGATTGCCGCAGTCGCCGCAACAGGCA
TGATCTACCTGACCTTCTACCTCAGCCTCAGCCGACCGGCTGCTGCCGCACAATACGTGCAGGCCGGCGCACTTGGCGCG
CTGTGCTTTGCCGCCGCACTGTTTGTGCAGGGGCTGACACGCCGCCTGCAAGTCAGCGAAAGCCTGGCCGAGCAACGCGC
CGCCGACGTGGCCAATCTGGAAGCACTCAACGCGCTGATCCTGCAGCGGATGCGCACCGGCATTCTGGTGCTGGATGAAT
TACACCGCGTACTACTGGCCAACCAGGGCGCCAACCATCTGCTTGGGCATGCCGACCTGACCGGCAAGATTCTCGACCCG
CACTGCCCCGAGCTGATCAAACGCATGCAGCAATGGTCGCACAACCCCAGCCTGCGCCCCGCCAGCCTGCAGGCTGCACC
CGACGGCCGAGTGCTGCAGCCGAGCTTTATCGCCCTGCAACGCGGCGAGCATAAACACACGCTGATCTTCCTCGATGACA
TCTCGCAGATCGCCCAGCAGGCGCAACAGCTCAAGCTCGCCTCCCTGGGCCGCCTGACTGCCGGTATCGCCCACGAGATT
CGCAACCCGTTAGGCGCAATCAGCCACGCTGCTCAGCTGCTACAGGAGTCTGAAGAACTGAAAGGTCCGGACCTACGCCT
GGCGCAGATCATTCAGGATCACTCAAGACGGATGAACTTAGTGATCGAGAACGTTCTGCAATTGTCGCGCCGGCGCCAGG
CCGAACCGCAGCTGCTCGACCTGAAGTACTGGCTACACCGCTTCGCCAGCGAGTTCCGCAGCAGCGCGGCCCCCGGCCAA
ACTCTGCACCTAGAAACCAGCAGCGGCAGCATTCAAACTCGCATGGATCCACATCAGCTCACCCAAGTGCTGAGCAACTT
GGTGGAAAACGGCCTGCGCTACAGCGCGCAGAAAAACAGGCACGGCCAGGTCTGGCTGAAGCTGTTCCGCGACCCGGAGA
GCGAGCTGCCGGTACTCGAAGTGCTGGACGACGGCCCCGGCGTATCCGAAGAGCAGCTGCACCATCTGTTCGAACCCTTC
TACACCACGGAAAACAAAGGCACCGGCCTGGGCCTGTATATTTCCCGCGAACTGTGCGAAAGCAACCAGGCCCGCCTCGA
CTATAAACTTCGCGAAGGCGGCGGCAGCTGCCTACGCATCACCTTCGCCCACCCGCGCAAACTGAGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(308-372)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

68.451

98.866

0.677