Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RHP75_RS03295 Genome accession   NZ_CP134499
Coordinates   680467..680958 (+) Length   163 a.a.
NCBI ID   WP_233686006.1    Uniprot ID   -
Organism   Pseudomonas sp. SG20056     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 675467..685958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHP75_RS03280 (RHP75_03280) bfr 675570..676034 (+) 465 WP_311090433.1 bacterioferritin -
  RHP75_RS03285 (RHP75_03285) uvrA 676091..678925 (-) 2835 WP_311090434.1 excinuclease ABC subunit UvrA -
  RHP75_RS03290 (RHP75_03290) - 679061..680449 (+) 1389 WP_311090435.1 MFS transporter -
  RHP75_RS03295 (RHP75_03295) ssb 680467..680958 (+) 492 WP_233686006.1 single-stranded DNA-binding protein Machinery gene
  RHP75_RS03300 (RHP75_03300) - 680980..681864 (+) 885 WP_311090436.1 sugar nucleotide-binding protein -
  RHP75_RS03305 (RHP75_03305) - 681857..682792 (+) 936 WP_311090437.1 NAD-dependent epimerase/dehydratase family protein -
  RHP75_RS03310 (RHP75_03310) - 682849..683535 (-) 687 WP_311090438.1 OmpW family outer membrane protein -
  RHP75_RS03315 (RHP75_03315) - 683777..684547 (+) 771 WP_311090439.1 DUF3450 domain-containing protein -
  RHP75_RS03320 (RHP75_03320) - 684544..685890 (+) 1347 WP_311090440.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18030.08 Da        Isoelectric Point: 5.3108

>NTDB_id=880562 RHP75_RS03295 WP_233686006.1 680467..680958(+) (ssb) [Pseudomonas sp. SG20056]
MARGVNKVILVGTCGQDPETRYLPSGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSLFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPDNAGGGDSAPRQQRPAPQREQQSAPRPAPQQAPQPAADFDSFDDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=880562 RHP75_RS03295 WP_233686006.1 680467..680958(+) (ssb) [Pseudomonas sp. SG20056]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACCTGCGGACAGGACCCGGAAACCCGTTACCTGCCGAGCGGCAA
CGCGGTCACCAACCTGAGCCTGGCGACCAGCGAGCAGTGGACCGACAAACAGACCGGTCAGAAGGTCGAGAAAACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAAGTGGCCGAGATCGCCGGCGAATACCTGCGCAAAGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGTGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAAATTATCGTCGACATGCAGGGCAC
CATGCAGCTGCTTGGCGGTCGTCCGGACAACGCCGGTGGCGGTGATTCCGCCCCGCGTCAGCAGCGCCCTGCGCCGCAGC
GCGAGCAGCAGTCAGCGCCACGCCCTGCACCCCAACAAGCACCTCAGCCTGCCGCGGATTTCGACAGCTTCGATGACGAC
ATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56

100

0.601
  ssb Glaesserella parasuis strain SC1401

46.961

100

0.521
  ssb Neisseria meningitidis MC58

48.295

100

0.521
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.521