Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   RJW51_RS09185 Genome accession   NZ_CP134491
Coordinates   1802199..1802843 (-) Length   214 a.a.
NCBI ID   WP_172089435.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 1628469     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1797199..1807843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW51_RS09160 (RJW51_09145) - 1797366..1798019 (+) 654 WP_172016055.1 YutD family protein -
  RJW51_RS09165 (RJW51_09150) rlmN 1798028..1799140 (+) 1113 WP_172089438.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  RJW51_RS09170 (RJW51_09155) - 1799137..1799649 (+) 513 WP_172089437.1 VanZ family protein -
  RJW51_RS09175 (RJW51_09160) nadE 1799797..1800621 (-) 825 WP_172075767.1 ammonia-dependent NAD(+) synthetase -
  RJW51_RS09180 (RJW51_09165) - 1800634..1802094 (-) 1461 WP_172089436.1 nicotinate phosphoribosyltransferase -
  RJW51_RS09185 (RJW51_09170) cclA/cilC 1802199..1802843 (-) 645 WP_172089435.1 prepilin peptidase Machinery gene
  RJW51_RS09190 (RJW51_09175) - 1802884..1803702 (-) 819 WP_172089434.1 cation diffusion facilitator family transporter -
  RJW51_RS09195 (RJW51_09180) - 1803824..1804342 (+) 519 WP_172089433.1 TetR family transcriptional regulator -
  RJW51_RS09200 (RJW51_09185) - 1804352..1804900 (+) 549 WP_172075775.1 class I SAM-dependent methyltransferase -
  RJW51_RS09205 (RJW51_09190) - 1805006..1806934 (+) 1929 WP_397610517.1 cation:proton antiporter -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24387.46 Da        Isoelectric Point: 8.1593

>NTDB_id=880395 RJW51_RS09185 WP_172089435.1 1802199..1802843(-) (cclA/cilC) [Streptococcus parasuis strain 1628469]
MKICILFFLGASIGSFLGLVIDRFPEQSIIRPSSHCSSCKKQLKVWDLIPILSQLSTASRCRYCKVKIPYWYAGLEFLTG
LAVLLCHFQFLSLTETILILAGLVLTIYDIKHQEYPFAVWLVFTFVALLLSQLNWLFCCFLALAFLTEKWQLNIGSGDFL
YLASLSLICGLTEILWIIQISSFLGLLVFTIYKPRSIPYIPFLFLASIFVILCI

Nucleotide


Download         Length: 645 bp        

>NTDB_id=880395 RJW51_RS09185 WP_172089435.1 1802199..1802843(-) (cclA/cilC) [Streptococcus parasuis strain 1628469]
ATGAAGATCTGTATCCTATTTTTCCTCGGAGCTTCAATTGGCTCCTTTTTGGGACTGGTCATTGACCGGTTCCCTGAACA
ATCCATTATCCGACCATCTAGTCATTGTAGTTCTTGTAAGAAGCAACTCAAGGTTTGGGACCTGATTCCCATTCTTTCTC
AGCTTTCAACCGCATCCAGATGTCGTTATTGCAAGGTAAAAATCCCCTATTGGTATGCTGGACTAGAATTCTTAACTGGA
TTGGCTGTCCTGCTATGCCATTTTCAATTCCTAAGCCTAACTGAAACTATCCTCATCCTTGCAGGGCTGGTTTTGACCAT
TTACGACATCAAGCATCAGGAATATCCTTTTGCCGTCTGGCTCGTTTTTACTTTTGTAGCTCTGTTACTCTCCCAGCTTA
ACTGGCTCTTTTGTTGCTTTTTAGCCTTGGCTTTTCTGACAGAGAAATGGCAGCTCAATATCGGTTCGGGTGATTTTCTA
TATTTGGCTAGTCTGTCCCTAATTTGTGGCTTGACTGAAATCCTATGGATTATTCAAATCAGCTCATTCTTAGGCTTACT
CGTCTTTACAATATACAAGCCAAGATCCATTCCTTACATACCATTCCTTTTTCTTGCGAGTATTTTCGTCATTCTGTGCA
TCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

50

96.262

0.481
  cclA/cilC Streptococcus pneumoniae Rx1

48.544

96.262

0.467
  cclA/cilC Streptococcus pneumoniae D39

48.544

96.262

0.467
  cclA/cilC Streptococcus pneumoniae R6

48.544

96.262

0.467
  cclA/cilC Streptococcus pneumoniae TIGR4

48.544

96.262

0.467
  cclA/cilC Streptococcus mitis NCTC 12261

47.573

96.262

0.458