Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   OCX20_RS08085 Genome accession   NZ_AP024738
Coordinates   1655346..1656320 (-) Length   324 a.a.
NCBI ID   WP_000697220.1    Uniprot ID   W8U5L8
Organism   Staphylococcus aureus strain 59731     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1650346..1661320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX20_RS08045 gcvT 1650847..1651938 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  OCX20_RS08050 - 1652097..1652621 (-) 525 WP_001015121.1 shikimate kinase -
  OCX20_RS08055 - 1652611..1652757 (-) 147 WP_001789879.1 hypothetical protein -
  OCX20_RS08060 comGF 1652854..1653351 (-) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  OCX20_RS08065 comGE 1653269..1653568 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  OCX20_RS08070 comGD 1653555..1654001 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  OCX20_RS08075 comGC 1653979..1654290 (-) 312 WP_261921278.1 competence type IV pilus major pilin ComGC Machinery gene
  OCX20_RS08080 comGB 1654304..1655374 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  OCX20_RS08085 comGA 1655346..1656320 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  OCX20_RS08090 - 1656372..1656995 (-) 624 WP_001223010.1 MBL fold metallo-hydrolase -
  OCX20_RS08095 - 1656992..1657321 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  OCX20_RS08100 - 1657321..1658307 (-) 987 WP_000161314.1 ROK family glucokinase -
  OCX20_RS08105 - 1658304..1658507 (-) 204 WP_000087561.1 YqgQ family protein -
  OCX20_RS08110 - 1658488..1659951 (-) 1464 WP_001017865.1 rhomboid family protein -
  OCX20_RS08115 - 1659963..1660502 (-) 540 WP_000164546.1 5-formyltetrahydrofolate cyclo-ligase -
  OCX20_RS08120 rpmG 1660711..1660860 (-) 150 WP_001265709.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36897.96 Da        Isoelectric Point: 8.8516

>NTDB_id=88039 OCX20_RS08085 WP_000697220.1 1655346..1656320(-) (comGA) [Staphylococcus aureus strain 59731]
MKILFQEIINKAIEMKASDVHFIPVKNEVSIKFRINDNLEQYEQIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHF
NKIYFLRISTLPLSLGQESCVIRIVPQFFQQQKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNDKAGINYVNSFKAILRCDPDVILIGEIRDKDVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLRYFFSHNHSLPSSFKNLEDKLDDMTKAGVICETTM
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=88039 OCX20_RS08085 WP_000697220.1 1655346..1656320(-) (comGA) [Staphylococcus aureus strain 59731]
TTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTTTATTCCAGTTAAAAA
TGAAGTAAGTATTAAATTTAGAATTAATGATAACTTGGAGCAGTATGAACAAATTGGGAATAGCATTTATCAAAAGTTAT
TAGTTTATATGAAGTTTCAAGCTGGGCTTGATGTTTCTACACAGCAAGTCGCACAGAGCGGTCGATATAGTTACCATTTC
AATAAAATATATTTTTTGAGAATATCAACTTTACCATTGTCACTTGGCCAAGAAAGTTGTGTTATCAGAATTGTACCTCA
ATTTTTTCAACAACAAAAATCAACTTATAAATTCAATGATTTTAAACACCTCATGAATAAGAAACAAGGATTACTATTGT
TTAGTGGGCCAACTGGTTCAGGAAAGAGTACATTAATGTATCAAATGGTCTCATACGCGAATAAAGCCTTGAATTTAAAT
GTAATTTCTATAGAGGATCCTGTAGAGATGCAAATTCCTGGTATCGTCCAAATTAATGTGAATGATAAAGCTGGCATTAA
CTATGTAAATTCGTTTAAAGCTATTTTAAGATGTGATCCTGATGTTATTTTAATAGGTGAAATCAGAGATAAAGATGTTG
CCAAGTGTGTTATACAGGCTAGTTTAAGTGGTCACCTTGTTCTGACTACATTGCATGCAACTGATTGTAAAGGTGCTATT
TTAAGGCTATTAGAAATGGGCATTTCTGTACAAGAATTGATACAGGCAACTAACTTAATTATAAACCAACGACTTGTAAC
TACTATTAAGCAACAGCGACAATTAGTATGCGAAATTCTATCTCAGCAACAACTCCGATATTTCTTTTCCCATAATCATT
CATTACCATCATCATTTAAGAACTTAGAAGATAAACTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAACTACAATG
GATAAATACATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W8U5L8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

100

100

1
  comGA Staphylococcus aureus N315

100

100

1

Multiple sequence alignment