Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   OCX20_RS08070 Genome accession   NZ_AP024738
Coordinates   1653555..1654001 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 59731     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1648555..1659001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX20_RS08040 gcvPA 1649481..1650827 (-) 1347 WP_117200971.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  OCX20_RS08045 gcvT 1650847..1651938 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  OCX20_RS08050 - 1652097..1652621 (-) 525 WP_001015121.1 shikimate kinase -
  OCX20_RS08055 - 1652611..1652757 (-) 147 WP_001789879.1 hypothetical protein -
  OCX20_RS08060 comGF 1652854..1653351 (-) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  OCX20_RS08065 comGE 1653269..1653568 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  OCX20_RS08070 comGD 1653555..1654001 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  OCX20_RS08075 comGC 1653979..1654290 (-) 312 WP_261921278.1 competence type IV pilus major pilin ComGC Machinery gene
  OCX20_RS08080 comGB 1654304..1655374 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  OCX20_RS08085 comGA 1655346..1656320 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  OCX20_RS08090 - 1656372..1656995 (-) 624 WP_001223010.1 MBL fold metallo-hydrolase -
  OCX20_RS08095 - 1656992..1657321 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  OCX20_RS08100 - 1657321..1658307 (-) 987 WP_000161314.1 ROK family glucokinase -
  OCX20_RS08105 - 1658304..1658507 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=88036 OCX20_RS08070 WP_001788899.1 1653555..1654001(-) (comGD) [Staphylococcus aureus strain 59731]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=88036 OCX20_RS08070 WP_001788899.1 1653555..1654001(-) (comGD) [Staphylococcus aureus strain 59731]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1

Multiple sequence alignment