Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   OCX20_RS08080 Genome accession   NZ_AP024738
Coordinates   1654304..1655374 (-) Length   356 a.a.
NCBI ID   WP_000776422.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 59731     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1649304..1660374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX20_RS08040 gcvPA 1649481..1650827 (-) 1347 WP_117200971.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  OCX20_RS08045 gcvT 1650847..1651938 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  OCX20_RS08050 - 1652097..1652621 (-) 525 WP_001015121.1 shikimate kinase -
  OCX20_RS08055 - 1652611..1652757 (-) 147 WP_001789879.1 hypothetical protein -
  OCX20_RS08060 comGF 1652854..1653351 (-) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  OCX20_RS08065 comGE 1653269..1653568 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  OCX20_RS08070 comGD 1653555..1654001 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  OCX20_RS08075 comGC 1653979..1654290 (-) 312 WP_261921278.1 competence type IV pilus major pilin ComGC Machinery gene
  OCX20_RS08080 comGB 1654304..1655374 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  OCX20_RS08085 comGA 1655346..1656320 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  OCX20_RS08090 - 1656372..1656995 (-) 624 WP_001223010.1 MBL fold metallo-hydrolase -
  OCX20_RS08095 - 1656992..1657321 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  OCX20_RS08100 - 1657321..1658307 (-) 987 WP_000161314.1 ROK family glucokinase -
  OCX20_RS08105 - 1658304..1658507 (-) 204 WP_000087561.1 YqgQ family protein -
  OCX20_RS08110 - 1658488..1659951 (-) 1464 WP_001017865.1 rhomboid family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41447.84 Da        Isoelectric Point: 10.0606

>NTDB_id=88038 OCX20_RS08080 WP_000776422.1 1654304..1655374(-) (comGB) [Staphylococcus aureus strain 59731]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=88038 OCX20_RS08080 WP_000776422.1 1654304..1655374(-) (comGB) [Staphylococcus aureus strain 59731]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAAATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATCTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCACAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

100

100

1
  comGB Staphylococcus aureus N315

100

100

1

Multiple sequence alignment