Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   RJW53_RS07260 Genome accession   NZ_CP134488
Coordinates   1409304..1410245 (-) Length   313 a.a.
NCBI ID   WP_024405765.1    Uniprot ID   A0AAP6DTB3
Organism   Streptococcus suis strain NLS50     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1404304..1415245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW53_RS07240 (RJW53_07240) - 1405472..1406191 (-) 720 WP_009910106.1 O-methyltransferase -
  RJW53_RS07245 (RJW53_07245) - 1406266..1406814 (-) 549 WP_002938103.1 DUF6630 family protein -
  RJW53_RS07250 (RJW53_07250) - 1406830..1407270 (-) 441 WP_012775191.1 hypothetical protein -
  RJW53_RS07255 (RJW53_07255) pepF 1407272..1409074 (-) 1803 WP_024405766.1 oligoendopeptidase F Regulator
  RJW53_RS07260 (RJW53_07260) coiA 1409304..1410245 (-) 942 WP_024405765.1 competence protein CoiA Machinery gene
  RJW53_RS07265 (RJW53_07265) metG 1410306..1412309 (-) 2004 WP_024405764.1 methionine--tRNA ligase -
  RJW53_RS07270 (RJW53_07270) - 1412466..1413059 (+) 594 WP_024405763.1 DUF1361 domain-containing protein -
  RJW53_RS07275 (RJW53_07275) - 1413359..1414396 (+) 1038 WP_012027206.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 36294.89 Da        Isoelectric Point: 7.8956

>NTDB_id=880326 RJW53_RS07260 WP_024405765.1 1409304..1410245(-) (coiA) [Streptococcus suis strain NLS50]
MLVALDEDGQVFNVLEHPAPQGRYSCPGCGGLVRYKSGKVLRSHFAHVTLRDCTYFSENESAQHLSLKSCLYSWLINAEQ
VELEKCLPSIGQVADLFVNNSLALEVQCSSLPISRLQLRTQAYHEAGLQVLWLLGKGLWIKERLSKLHKQFLSFSMNMGF
HLWELDDEKKELRLRYLIHEDLRGKVHCLTKFFPFGEGNLLDILRLPFAKQALSHLTCPLDRDLPRYIAQQLYYKSPNWL
ALQAESYSRGENLLTKTAEEWYPHIRLPRSAIGFAQIQKDLTLVYQDFDQYYGNIEDKQKQVLYPPIIYRKPM

Nucleotide


Download         Length: 942 bp        

>NTDB_id=880326 RJW53_RS07260 WP_024405765.1 1409304..1410245(-) (coiA) [Streptococcus suis strain NLS50]
ATGTTAGTTGCACTTGATGAAGATGGACAAGTTTTTAATGTCTTGGAACATCCTGCGCCGCAAGGTCGCTATTCTTGTCC
AGGTTGTGGAGGACTGGTCCGATACAAATCCGGAAAAGTTCTGCGTTCGCACTTTGCCCATGTAACCCTACGGGATTGCA
CATACTTTTCCGAGAATGAGTCAGCCCAGCATCTGTCACTTAAGTCTTGTCTGTACAGTTGGTTAATCAATGCCGAACAA
GTTGAACTTGAAAAATGCCTGCCTAGTATAGGGCAGGTCGCTGATTTATTTGTTAATAATAGTCTAGCTTTGGAAGTCCA
ATGTTCCAGTCTGCCCATTTCTCGTTTGCAGCTGAGGACGCAAGCCTATCATGAAGCTGGTCTTCAGGTTCTCTGGCTGT
TGGGAAAAGGCCTATGGATAAAAGAAAGATTAAGTAAATTACACAAGCAATTTCTCTCTTTTAGTATGAACATGGGTTTT
CACCTCTGGGAATTGGATGATGAGAAAAAAGAATTGCGTCTTCGTTACCTTATTCACGAAGACTTACGAGGTAAGGTCCA
CTGTCTGACAAAGTTTTTTCCATTTGGCGAGGGAAATTTATTGGACATCTTGCGTCTGCCTTTTGCCAAGCAAGCTTTAT
CGCATCTTACTTGCCCGTTAGATAGGGATTTGCCTCGCTACATTGCTCAACAGCTTTATTACAAATCCCCCAATTGGTTA
GCCCTGCAGGCAGAGTCTTATAGCCGAGGGGAGAATTTGCTGACAAAGACGGCAGAAGAATGGTACCCCCACATCCGTCT
GCCCCGCTCTGCCATTGGCTTTGCCCAAATACAAAAAGATTTAACCCTAGTTTATCAGGATTTTGACCAGTATTACGGCA
ATATTGAAGACAAGCAGAAACAGGTTCTATATCCACCTATAATTTATAGAAAACCAATGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(20-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

52.885

99.681

0.527
  coiA Streptococcus pneumoniae TIGR4

50.962

99.681

0.508
  coiA Streptococcus pneumoniae Rx1

50.962

99.681

0.508
  coiA Streptococcus pneumoniae D39

50.962

99.681

0.508
  coiA Streptococcus pneumoniae R6

50.962

99.681

0.508
  coiA Lactococcus lactis subsp. cremoris KW2

41.562

100

0.425