Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   RJW54_RS09335 Genome accession   NZ_CP134487
Coordinates   1878402..1879067 (-) Length   221 a.a.
NCBI ID   WP_043032914.1    Uniprot ID   A0A116QBH8
Organism   Streptococcus suis strain MY1C3_3B     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1873402..1884067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW54_RS09330 (RJW54_09310) hpf 1877783..1878325 (-) 543 WP_004194117.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  RJW54_RS09335 (RJW54_09315) comFC/cflB 1878402..1879067 (-) 666 WP_043032914.1 ComF family protein Machinery gene
  RJW54_RS09340 (RJW54_09320) comFA/cflA 1879060..1880352 (-) 1293 WP_024394375.1 DEAD/DEAH box helicase Machinery gene
  RJW54_RS09345 (RJW54_09325) - 1880409..1881041 (+) 633 WP_024394374.1 YigZ family protein -
  RJW54_RS09350 (RJW54_09330) - 1881385..1881762 (-) 378 WP_024394270.1 PBECR2 nuclease fold domain-containing protein -
  RJW54_RS09355 (RJW54_09335) - 1881827..1882564 (-) 738 WP_141605029.1 PlySs2 family phage lysin -
  RJW54_RS09360 (RJW54_09340) - 1882661..1883083 (-) 423 WP_141605028.1 phage holin family protein -
  RJW54_RS09365 (RJW54_09345) - 1883176..1883517 (-) 342 WP_141605027.1 hypothetical protein -
  RJW54_RS09370 (RJW54_09350) - 1883520..1883735 (-) 216 WP_141605026.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25835.63 Da        Isoelectric Point: 8.2726

>NTDB_id=880283 RJW54_RS09335 WP_043032914.1 1878402..1879067(-) (comFC/cflB) [Streptococcus suis strain MY1C3_3B]
MSNCLLCDQTMKNKTRFSDLIFFSKEKSGICEECFSTFEEIAEQHCPHCYKNGESESCKDCQYWQNQGKPVVHTALYQYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFPDYTIVPIPISQKRLSERGFNQVEGLLNATNIPYQSLLGKYESQKQS
SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=880283 RJW54_RS09335 WP_043032914.1 1878402..1879067(-) (comFC/cflB) [Streptococcus suis strain MY1C3_3B]
ATGTCTAATTGTCTATTGTGTGATCAAACTATGAAAAATAAAACAAGATTTTCAGATCTCATCTTCTTTAGTAAAGAAAA
ATCGGGCATCTGTGAAGAATGTTTTTCGACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAATGGGG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAACCAGTTGTCCACACAGCTTTGTACCAATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG
AATAGCGTTAAGCCAATTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTATCAGAACGCGGTTTTA
ATCAAGTGGAAGGACTTTTGAATGCTACAAATATTCCCTATCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCA
TCTAAAAATCGTGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATATACAACAGGAGCTACAATCCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A116QBH8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae Rx1

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae D39

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae R6

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae TIGR4

49.083

98.643

0.484
  comFC/cflB Streptococcus mitis NCTC 12261

49.083

98.643

0.484