Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaH   Type   Regulator
Locus tag   RJW54_RS05520 Genome accession   NZ_CP134487
Coordinates   1107016..1108395 (-) Length   459 a.a.
NCBI ID   WP_024394629.1    Uniprot ID   A0A0Z8PNG1
Organism   Streptococcus suis strain MY1C3_3B     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1102016..1113395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW54_RS05500 (RJW54_05480) - 1103275..1103865 (-) 591 WP_009909951.1 class I SAM-dependent methyltransferase -
  RJW54_RS05505 (RJW54_05485) coaA 1103974..1104894 (+) 921 WP_024381359.1 type I pantothenate kinase -
  RJW54_RS05510 (RJW54_05490) rpsT 1104953..1105201 (+) 249 WP_012027069.1 30S ribosomal protein S20 -
  RJW54_RS05515 (RJW54_05495) - 1105463..1106692 (-) 1230 WP_024394628.1 transglutaminase domain-containing protein -
  RJW54_RS05520 (RJW54_05500) ciaH 1107016..1108395 (-) 1380 WP_024394629.1 cell wall metabolism sensor histidine kinase WalK Regulator
  RJW54_RS05525 (RJW54_05505) ciaR 1108388..1109059 (-) 672 WP_024385291.1 response regulator transcription factor Regulator
  RJW54_RS05530 - 1109253..1109588 (-) 336 Protein_1059 hypothetical protein -
  RJW54_RS05535 (RJW54_05515) phoU 1109754..1110410 (-) 657 WP_024394630.1 phosphate signaling complex protein PhoU -
  RJW54_RS05540 (RJW54_05520) pstB 1110439..1111197 (-) 759 WP_002937614.1 phosphate ABC transporter ATP-binding protein PstB -
  RJW54_RS05545 (RJW54_05525) pstB 1111209..1112012 (-) 804 WP_002937615.1 phosphate ABC transporter ATP-binding protein PstB -
  RJW54_RS05550 (RJW54_05530) pstA 1112037..1112924 (-) 888 WP_002937616.1 phosphate ABC transporter permease PstA -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 51923.64 Da        Isoelectric Point: 6.8882

>NTDB_id=880266 RJW54_RS05520 WP_024394629.1 1107016..1108395(-) (ciaH) [Streptococcus suis strain MY1C3_3B]
MPKRIRKLVYTDKFSFFIRYFAVFTLIFGLMTAIIFQLMRSTMYQNSDNTLKRIKKEPALAVGFAIARTYEPNSVFILQD
SPTGEETTSSSSDSMPVPKNQKNTRAGDQLRLGANTHVLLYSKSGEMINPDTFTGLADLSLDKEKLGEIKETTVESSFGM
SEDYRYITIGLATDELGYYSSYDIKYATILVNVSQIKSSIESYEATVAIVMVSAWLISILASIYLSNLSMRPILISYQKQ
KDFVENASHELRTPLAVLQNRLESLFRHPETTILESSESIGSSLEEVRNMRLLTTNLLNLARRDDGLKVDMIDVQPNYFD
EIFANYLMIAEENGKTLTVNNLIHQPIRTDKVLIKQLLTILFDNAMKYTDEDGTIQIAANIKDKLVCFTVIDNGLGISDT
DKKKIFDRFYRVDKARTRQKGGFGLGLSLAQQIIKNLDGEISVRDNQPKGTIFEVRLPK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=880266 RJW54_RS05520 WP_024394629.1 1107016..1108395(-) (ciaH) [Streptococcus suis strain MY1C3_3B]
ATGCCTAAGCGAATCAGAAAATTAGTGTATACGGATAAATTTTCCTTCTTTATCCGTTATTTTGCAGTATTTACCCTGAT
TTTTGGCTTGATGACAGCTATCATTTTTCAATTAATGCGTTCAACTATGTACCAAAATTCAGATAACACCTTGAAACGCA
TTAAGAAAGAACCAGCGCTGGCTGTTGGTTTTGCAATCGCAAGAACCTATGAGCCCAATTCTGTATTTATCCTTCAAGAT
AGTCCAACTGGTGAAGAAACTACGAGCTCTAGTTCAGATAGCATGCCTGTTCCTAAAAATCAAAAAAATACTAGAGCTGG
AGATCAGCTGAGATTAGGTGCCAATACTCATGTTTTACTCTATAGTAAAAGTGGAGAGATGATTAATCCAGATACTTTTA
CTGGTTTGGCCGACCTATCATTAGACAAGGAAAAATTGGGTGAAATTAAGGAAACTACGGTTGAATCAAGTTTTGGTATG
TCTGAAGATTATCGCTATATAACGATTGGGCTGGCTACAGATGAACTAGGTTATTATTCGTCCTATGATATAAAATATGC
GACAATTTTGGTGAATGTCAGCCAAATTAAATCTTCCATTGAGAGCTATGAAGCGACAGTTGCTATTGTTATGGTATCAG
CTTGGTTGATTTCTATACTAGCAAGTATTTACCTATCGAATCTTAGCATGCGTCCAATCCTAATTAGTTATCAAAAACAA
AAAGACTTCGTTGAAAATGCTAGTCATGAGTTACGCACACCGTTGGCAGTTCTTCAAAATCGCCTGGAAAGTCTATTTCG
TCATCCCGAGACAACTATTTTGGAAAGTAGTGAAAGCATCGGATCTAGTTTAGAAGAAGTTCGAAATATGCGACTATTGA
CAACAAATTTACTTAATTTGGCTCGTCGTGATGATGGCTTAAAAGTCGATATGATCGATGTCCAACCCAACTATTTTGAT
GAAATCTTTGCTAATTACCTTATGATTGCCGAAGAAAATGGAAAAACTCTAACAGTTAATAATTTGATTCATCAGCCAAT
TCGAACAGACAAGGTTTTGATTAAACAGTTGCTCACCATTTTGTTTGACAACGCTATGAAGTATACCGATGAAGATGGGA
CAATTCAAATAGCAGCTAATATCAAGGACAAACTAGTTTGTTTTACAGTTATTGACAATGGTTTGGGAATCAGCGATACC
GATAAAAAGAAAATCTTTGATCGCTTTTACCGAGTTGACAAGGCTAGAACACGTCAAAAAGGTGGATTTGGTTTAGGTTT
ATCTTTAGCTCAACAAATTATTAAGAATTTAGATGGTGAGATTTCTGTGAGAGATAACCAACCGAAAGGAACTATTTTTG
AGGTACGTTTACCCAAATAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(240-306)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(350-458)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8PNG1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

49.451

99.129

0.49
  ciaH Streptococcus pneumoniae Rx1

49.127

99.782

0.49
  ciaH Streptococcus pneumoniae D39

49.127

99.782

0.49
  ciaH Streptococcus pneumoniae R6

49.127

99.782

0.49
  ciaH Streptococcus pneumoniae TIGR4

49.127

99.782

0.49