Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RJW54_RS02470 Genome accession   NZ_CP134487
Coordinates   500393..500887 (+) Length   164 a.a.
NCBI ID   WP_002942409.1    Uniprot ID   A0A075SLH4
Organism   Streptococcus suis strain MY1C3_3B     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 495393..505887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW54_RS02445 (RJW54_02430) - 496179..496781 (+) 603 WP_002937724.1 histidine phosphatase family protein -
  RJW54_RS02450 (RJW54_02435) - 496793..497410 (+) 618 WP_002937720.1 histidine phosphatase family protein -
  RJW54_RS02455 (RJW54_02440) - 497407..498846 (+) 1440 WP_172015498.1 6-phospho-beta-glucosidase -
  RJW54_RS02460 (RJW54_02445) - 498930..499919 (+) 990 WP_014736331.1 lipoate--protein ligase -
  RJW54_RS02465 (RJW54_02450) rpsF 500091..500381 (+) 291 WP_002942403.1 30S ribosomal protein S6 -
  RJW54_RS02470 (RJW54_02455) ssbA 500393..500887 (+) 495 WP_002942409.1 single-stranded DNA-binding protein Machinery gene
  RJW54_RS02475 (RJW54_02460) rpsR 500920..501159 (+) 240 WP_002939250.1 30S ribosomal protein S18 -
  RJW54_RS02480 (RJW54_02465) - 501496..502152 (-) 657 WP_012027735.1 DUF1129 domain-containing protein -
  RJW54_RS02485 (RJW54_02470) - 502168..503112 (-) 945 WP_002939248.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18102.87 Da        Isoelectric Point: 4.7294

>NTDB_id=880260 RJW54_RS02470 WP_002942409.1 500393..500887(+) (ssbA) [Streptococcus suis strain MY1C3_3B]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGASNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=880260 RJW54_RS02470 WP_002942409.1 500393..500887(+) (ssbA) [Streptococcus suis strain MY1C3_3B]
ATGATTAATAATGTAGTATTGGTTGGTCGTATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAATCAAGCTGTTGC
GACTTTTACTTTGGCGGTTAACCGCAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAGAAAGGTGCTCTGATTGGTGTTACAGGTCGTATCCAGACACGT
AGCTATGATAATCAGCAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTAC
TGCCCGTGAAGGTCAAGGTGGAGGCTATTCAGCTGGCAACTCGTTTGCTGGAGGAAATGACTATAACTCGCCTTATCAAG
CGCCTGCACAATCTACACCAAACTTCGCTCGAGAAGAGAGTCCATTTGGAGCAAGTAATCCAATGGATATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075SLH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssb Latilactobacillus sakei subsp. sakei 23K

56.322

100

0.598
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366