Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   RJW54_RS02270 Genome accession   NZ_CP134487
Coordinates   458824..459558 (+) Length   244 a.a.
NCBI ID   WP_002939204.1    Uniprot ID   A0A0K2E869
Organism   Streptococcus suis strain MY1C3_3B     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 453824..464558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW54_RS02240 (RJW54_02225) - 454020..455684 (+) 1665 WP_024394949.1 DAK2 domain-containing protein -
  RJW54_RS02245 (RJW54_02230) tsaE 455785..456225 (+) 441 WP_024376437.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  RJW54_RS02250 (RJW54_02235) - 456218..456745 (+) 528 WP_002939196.1 GNAT family N-acetyltransferase -
  RJW54_RS02255 (RJW54_02240) - 456742..457935 (+) 1194 WP_002939198.1 LCP family protein -
  RJW54_RS02260 (RJW54_02245) - 458044..458346 (-) 303 WP_002939199.1 hypothetical protein -
  RJW54_RS02265 (RJW54_02250) - 458348..458761 (-) 414 WP_002939203.1 HIT family protein -
  RJW54_RS02270 (RJW54_02255) pptA 458824..459558 (+) 735 WP_002939204.1 ABC transporter ATP-binding protein Regulator
  RJW54_RS02275 (RJW54_02260) - 459555..460595 (+) 1041 WP_043032974.1 ABC transporter permease -
  RJW54_RS02280 (RJW54_02265) ccrZ 460645..461439 (+) 795 WP_013730554.1 cell cycle regulator CcrZ -
  RJW54_RS02285 (RJW54_02270) trmB 461436..462074 (+) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  RJW54_RS02290 (RJW54_02275) rimP 462332..462802 (+) 471 WP_002942369.1 ribosome maturation factor RimP -
  RJW54_RS02295 (RJW54_02280) nusA 462875..464017 (+) 1143 WP_004194726.1 transcription termination factor NusA -
  RJW54_RS02300 (RJW54_02285) rnpM 464034..464330 (+) 297 WP_002942375.1 RNase P modulator RnpM -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26760.04 Da        Isoelectric Point: 4.3999

>NTDB_id=880259 RJW54_RS02270 WP_002939204.1 458824..459558(+) (pptA) [Streptococcus suis strain MY1C3_3B]
MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGQIAIDGLTLLQGAENYRKKIGFIP
ETPSLYEELTLKEHLEVVAMAYDLSWEQAWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLIALLGEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQSAFGMDGASLNEIYLALTQE
GVAG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=880259 RJW54_RS02270 WP_002939204.1 458824..459558(+) (pptA) [Streptococcus suis strain MY1C3_3B]
ATGTTAGAAGTAAAAAATGTAACTGGAGGATATGTCAATATCCCAGTTTTGAAAGATGTATCTTTTACCGTTGAGGATGG
TCAATTAGTTGGTCTAATTGGTTTAAATGGTGCAGGGAAATCAACGACTATTAAGGAAATTATCGGTCTTTTGACCCCCT
ATCAAGGACAGATTGCAATTGACGGCCTAACTTTGCTACAAGGGGCTGAAAATTATCGGAAGAAGATTGGGTTTATCCCT
GAAACACCAAGTTTGTATGAAGAACTAACCCTCAAAGAGCACTTGGAAGTGGTAGCAATGGCCTATGATTTATCCTGGGA
GCAAGCTTGGGGACGTGTTGAGCACTTGTTAAAACTGTTTCGCTTGGATGAGAAATTGGACTGGTTTCCTGTCAATTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATTTGTGCTTTTATGGTGGAGCCGAGTCTATTGATTGTTGATGAGCCTTTT
CTGGGATTAGACCCTGTGGCTATCTCTGATTTAATCGCTCTTTTGGGGGAAGAAAAATCTAAGGGCACTTCAATCCTCAT
GTCCACTCACGTTCTTGACTCAGCTGAGAAAATGTGCGACTCTTTTGTGATTTTACATCAGGGACAGGTCCGTGCAACTG
GAAATTTGGAGGAGCTACAAAGCGCATTTGGTATGGATGGTGCAAGTCTGAATGAAATTTATCTGGCCTTGACGCAAGAA
GGAGTGGCTGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K2E869

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.314

97.951

0.738
  pptA Streptococcus thermophilus LMD-9

73.64

97.951

0.721