Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   RJW54_RS02210 Genome accession   NZ_CP134487
Coordinates   447547..449337 (+) Length   596 a.a.
NCBI ID   WP_013730559.1    Uniprot ID   -
Organism   Streptococcus suis strain MY1C3_3B     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 442547..454337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW54_RS02195 (RJW54_02180) sufU 443614..444054 (+) 441 WP_002938153.1 Fe-S cluster assembly sulfur transfer protein SufU -
  RJW54_RS02200 (RJW54_02185) sufB 444404..445819 (+) 1416 WP_002938151.1 Fe-S cluster assembly protein SufB -
  RJW54_RS02205 (RJW54_02190) pbp3 446093..447334 (-) 1242 WP_002938148.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  RJW54_RS02210 (RJW54_02195) oppA 447547..449337 (+) 1791 WP_013730559.1 oligopeptide ABC transporter substrate-binding protein Regulator
  RJW54_RS02215 (RJW54_02200) - 449714..450712 (+) 999 WP_009910778.1 ABC transporter ATP-binding protein -
  RJW54_RS02220 (RJW54_02205) - 450715..451656 (+) 942 WP_002938145.1 ATP-binding cassette domain-containing protein -
  RJW54_RS02225 (RJW54_02210) opp4B 451658..452614 (+) 957 WP_002938143.1 oligopeptide ABC transporter permease -
  RJW54_RS02230 (RJW54_02215) - 452628..453530 (+) 903 WP_024394948.1 ABC transporter permease -
  RJW54_RS02235 (RJW54_02220) - 453652..454017 (+) 366 WP_043032973.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 65812.86 Da        Isoelectric Point: 4.6364

>NTDB_id=880258 RJW54_RS02210 WP_013730559.1 447547..449337(+) (oppA) [Streptococcus suis strain MY1C3_3B]
MKKTTKLFALAGVTLLSASVLAACGSKQSGAAKQELSFPAEVKQDGTAVSDAQLKYAWVSPTTSSGLLIDELTENTTDST
FGGFVDISMFGYDGERKLDDSGLAKAEFDVKGKKITISLTGKDYKWSDGEPFTINDYIFTIKSMASKDYTGIRFDDKFLN
IEGMQEFVDGKASDISGIKKVDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPWK
IKEIVNGESITYVPNEYFFKGTKPKTSSLKIDIVSPDTIVSEMKAGNYDIAEMPVDQLDSYKDVSNLNIVGQLESSYEYI
SFNLGKYDEAANKNVMDEKAKMNDVKLRQAIAYAIDTKTAGKSLYNGLYHPAKSLIISFFGDIHDSELEGYSYNPEKAKK
LLDEAGYKDVDGDGIREGKDGKAFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEGKSFYNSVQANDPAID
MYAGGWSTGYDPNPSGLWGSVAAFNMSRFVSDENTKLLEAISSAESFDDKKNVENYKAWQKYAHEQAFAIPTFESESIVA
LNKRVKNYDTNYGSASGKGIALENIELTADKGVVAE

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=880258 RJW54_RS02210 WP_013730559.1 447547..449337(+) (oppA) [Streptococcus suis strain MY1C3_3B]
ATGAAAAAGACAACGAAACTTTTTGCACTTGCAGGTGTGACTCTCCTTTCAGCATCTGTTCTTGCAGCATGTGGTTCAAA
ACAATCAGGTGCAGCAAAACAGGAATTGTCATTCCCAGCTGAAGTAAAACAAGACGGAACAGCAGTGTCTGACGCTCAGT
TGAAATACGCATGGGTATCACCAACAACTTCATCAGGTCTCTTGATTGATGAGTTGACTGAAAATACGACTGACTCAACA
TTTGGTGGTTTTGTTGATATTTCAATGTTCGGTTACGACGGAGAACGTAAGTTGGACGACTCAGGTCTTGCCAAGGCTGA
ATTTGATGTGAAAGGTAAAAAAATCACAATTAGCTTGACAGGCAAGGATTACAAGTGGTCAGATGGTGAGCCATTCACAA
TCAACGACTACATCTTTACAATTAAGTCAATGGCAAGCAAAGACTATACAGGTATTCGTTTTGATGATAAATTCTTGAAC
ATTGAAGGCATGCAAGAATTTGTTGATGGAAAAGCATCAGACATCTCTGGTATTAAGAAAGTTGATGACTATACAGTAGA
ATTGACTGTAAAAGAAATGTCACCTTCAATGATGTATGCAGGTGGTGATGTCCCAGCCTATATCCAACCAGAACACATCT
ATAAAGACATCCCTGTTGCAGACTGGGAAAAGAGCGAATACTCACGTACTGCGAAGCTTGTTGGTATGGGACCGTGGAAG
ATTAAAGAAATTGTTAATGGTGAGTCTATCACTTACGTACCAAACGAATACTTTTTCAAGGGTACGAAACCAAAAACAAG
CTCATTGAAGATTGACATCGTATCTCCTGATACTATTGTTTCTGAAATGAAAGCGGGGAATTATGATATTGCTGAAATGC
CGGTTGATCAGTTAGATTCATATAAGGATGTTTCTAACTTGAATATCGTTGGTCAGTTAGAGTCGTCTTATGAGTATATC
TCGTTTAATCTTGGTAAATATGACGAAGCAGCTAATAAGAACGTTATGGATGAAAAGGCTAAGATGAATGATGTGAAACT
TCGTCAAGCAATTGCCTATGCAATTGATACCAAGACAGCTGGCAAATCATTGTACAACGGTCTTTACCACCCTGCAAAAT
CATTGATTATCTCATTCTTCGGGGATATTCATGATTCAGAGTTGGAAGGCTATTCATACAATCCTGAAAAAGCGAAAAAG
CTTTTGGATGAAGCTGGCTACAAAGATGTAGATGGCGATGGTATCCGTGAAGGTAAAGACGGTAAGGCGTTCAAAATTAC
CTTTGCTGCTCGTAAACGTACTGAAGCTAACGAAGCGCTTGTACAACAATATATTGCTTGGTGGAAAGAAGTTGGCTTGA
ATGTCGAACTTTACACAGGACGTACAGTTGAAGGTAAGTCGTTCTACAACTCAGTTCAAGCTAATGATCCTGCTATTGAT
ATGTATGCTGGTGGATGGTCAACAGGTTACGATCCAAATCCAAGTGGTCTATGGGGGTCTGTCGCAGCCTTCAATATGTC
ACGTTTCGTGTCCGATGAAAACACCAAGTTATTGGAAGCTATCAGCTCAGCAGAGTCGTTTGATGATAAGAAAAACGTTG
AGAACTATAAGGCTTGGCAAAAATATGCTCACGAGCAAGCATTTGCTATTCCAACATTTGAATCTGAGTCAATTGTAGCA
CTTAACAAACGTGTGAAAAACTATGACACTAACTACGGTTCAGCTTCAGGTAAAGGTATCGCTCTTGAGAATATCGAACT
TACTGCTGATAAAGGTGTAGTGGCAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(103-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

96.644

100

0.966