Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   RJW49_RS07845 Genome accession   NZ_CP134477
Coordinates   1540545..1541189 (+) Length   214 a.a.
NCBI ID   WP_014736223.1    Uniprot ID   -
Organism   Streptococcus suis strain NLS40     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1535545..1546189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW49_RS07820 (RJW49_07820) - 1536206..1537543 (-) 1338 WP_014736218.1 hemolysin family protein -
  RJW49_RS07825 (RJW49_07825) - 1537676..1538455 (+) 780 WP_014736219.1 ABC transporter ATP-binding protein -
  RJW49_RS07830 (RJW49_07830) - 1538471..1539025 (-) 555 WP_014736220.1 class I SAM-dependent methyltransferase -
  RJW49_RS07835 (RJW49_07835) - 1539035..1539553 (-) 519 WP_014736221.1 TetR/AcrR family transcriptional regulator -
  RJW49_RS07840 (RJW49_07840) - 1539675..1540493 (+) 819 WP_014736222.1 cation diffusion facilitator family transporter -
  RJW49_RS07845 (RJW49_07845) cclA/cilC 1540545..1541189 (+) 645 WP_014736223.1 A24 family peptidase Machinery gene
  RJW49_RS07850 (RJW49_07850) - 1541297..1542757 (+) 1461 WP_014736224.1 nicotinate phosphoribosyltransferase -
  RJW49_RS07855 (RJW49_07855) nadE 1542770..1543594 (+) 825 WP_074393537.1 ammonia-dependent NAD(+) synthetase -
  RJW49_RS07860 (RJW49_07860) tnpA 1544009..1544522 (-) 514 Protein_1509 IS200/IS605 family transposase -
  RJW49_RS07865 (RJW49_07865) - 1545434..1545961 (-) 528 WP_002942846.1 VanZ family protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24215.33 Da        Isoelectric Point: 8.4760

>NTDB_id=880226 RJW49_RS07845 WP_014736223.1 1540545..1541189(+) (cclA/cilC) [Streptococcus suis strain NLS40]
MKTIILFFLGASIGSFLGLVIDRFPEQSIIAPSSHCNACKRRLKAWDLIPVLSQLSTKSKCRYCKAKIPYWYLGLEFLAG
LVVLLCHFQVLNLTETILILAGLVLTIYDIKHQEYPFAVWLVFTFIALVLSQLNWLFCSFLLLAYLIEKWQVNIGSGDFL
YLASLALICGFTELLWIIQISSLLGLLVFAIFKPKSIPYVPLLFISSIPIILCT

Nucleotide


Download         Length: 645 bp        

>NTDB_id=880226 RJW49_RS07845 WP_014736223.1 1540545..1541189(+) (cclA/cilC) [Streptococcus suis strain NLS40]
ATGAAGACAATTATCCTATTTTTCCTTGGAGCTTCTATCGGCTCCTTCTTGGGATTGGTCATCGACCGTTTCCCTGAACA
GTCCATTATCGCCCCCTCTAGTCACTGCAATGCCTGCAAGCGACGGCTCAAGGCCTGGGACTTAATTCCAGTCCTATCCC
AGCTTTCGACAAAATCCAAATGCCGTTACTGCAAGGCGAAGATACCTTATTGGTATCTGGGACTAGAATTCTTAGCTGGT
CTAGTTGTCCTGCTCTGCCATTTTCAAGTCCTAAACCTAACCGAAACCATTCTCATCTTGGCAGGACTAGTTTTGACCAT
TTACGATATCAAACATCAGGAATATCCTTTTGCTGTCTGGCTTGTTTTTACTTTTATAGCTCTGGTACTCTCCCAGCTCA
ACTGGCTTTTCTGTAGCTTTTTACTCTTGGCCTATCTGATTGAAAAATGGCAAGTCAATATTGGTTCTGGTGACTTTCTC
TATCTGGCAAGTTTGGCCTTAATATGTGGATTTACAGAACTCCTCTGGATTATCCAGATTAGTTCCCTCCTAGGGCTTCT
TGTCTTCGCCATTTTCAAACCCAAGTCTATTCCCTACGTACCACTCCTTTTCATTTCAAGTATTCCTATCATTCTGTGCA
CCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

48.585

99.065

0.481
  cclA/cilC Streptococcus pneumoniae Rx1

48.544

96.262

0.467
  cclA/cilC Streptococcus pneumoniae D39

48.544

96.262

0.467
  cclA/cilC Streptococcus pneumoniae R6

48.544

96.262

0.467
  cclA/cilC Streptococcus pneumoniae TIGR4

46.698

99.065

0.463
  cclA/cilC Streptococcus mitis NCTC 12261

44.811

99.065

0.444