Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   RJW55_RS02930 Genome accession   NZ_CP134473
Coordinates   604929..605573 (-) Length   214 a.a.
NCBI ID   WP_024396126.1    Uniprot ID   A0A0Z8EJ61
Organism   Streptococcus suis strain TMW_SS028     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 599929..610573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW55_RS02910 (RJW55_02910) - 600158..600679 (+) 522 WP_043026528.1 VanZ family protein -
  RJW55_RS02915 (RJW55_02915) trpB 601306..602481 (+) 1176 WP_043026526.1 tryptophan synthase subunit beta -
  RJW55_RS02920 (RJW55_02920) nadE 602524..603348 (-) 825 WP_043026524.1 ammonia-dependent NAD(+) synthetase -
  RJW55_RS02925 (RJW55_02925) - 603361..604821 (-) 1461 WP_043026522.1 nicotinate phosphoribosyltransferase -
  RJW55_RS02930 (RJW55_02930) cclA/cilC 604929..605573 (-) 645 WP_024396126.1 A24 family peptidase Machinery gene
  RJW55_RS02935 (RJW55_02935) - 605627..606445 (-) 819 WP_024396127.1 cation diffusion facilitator family transporter -
  RJW55_RS02940 (RJW55_02940) - 606567..607085 (+) 519 WP_002942861.1 TetR/AcrR family transcriptional regulator -
  RJW55_RS02945 (RJW55_02945) - 607095..607649 (+) 555 WP_024396129.1 class I SAM-dependent methyltransferase -
  RJW55_RS02950 (RJW55_02950) - 607665..608444 (-) 780 WP_043026520.1 ABC transporter ATP-binding protein -
  RJW55_RS02955 (RJW55_02955) - 608577..609914 (+) 1338 WP_002942867.1 hemolysin family protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24255.27 Da        Isoelectric Point: 8.4760

>NTDB_id=880157 RJW55_RS02930 WP_024396126.1 604929..605573(-) (cclA/cilC) [Streptococcus suis strain TMW_SS028]
MKTIILFFLGASIGSFLGLVIDRFPEQSIISPSSHCNACKRRLKAWDLIPILSQLSTKSKCRYCKAKIPYWYLGLEFLAG
LVVLLCHFQVLNLTETILSLAGLVLTIYDIKHQEYPFAVWLVFTFTALVLSQLNWLFCGFLLLAYLTEKWQFNIGSGDFL
YLASLALICGFTELLWIIQISSLLGLLVFTIFKPKSIPYVPLLFLSSIPIILCI

Nucleotide


Download         Length: 645 bp        

>NTDB_id=880157 RJW55_RS02930 WP_024396126.1 604929..605573(-) (cclA/cilC) [Streptococcus suis strain TMW_SS028]
ATGAAGACAATTATCCTATTTTTCCTTGGAGCTTCAATCGGCTCCTTCTTGGGATTGGTCATCGACCGTTTCCCTGAACA
GTCCATTATCTCCCCCTCTAGTCACTGCAATGCCTGCAAGCGACGGCTCAAGGCCTGGGACCTAATACCCATCCTGTCCC
AGCTTTCGACAAAATCTAAATGCCGTTACTGCAAGGCGAAGATACCTTATTGGTATCTGGGATTGGAATTCTTAGCTGGT
CTAGTTGTCCTGCTCTGCCATTTTCAAGTCCTAAACCTAACCGAAACCATTCTCAGCTTGGCAGGACTAGTTTTGACCAT
TTACGACATCAAACATCAGGAATATCCTTTTGCTGTCTGGCTCGTTTTTACTTTTACAGCTCTGGTACTCTCCCAGCTCA
ACTGGCTCTTCTGTGGCTTTTTACTCTTGGCCTATCTAACTGAAAAATGGCAATTCAATATTGGTTCTGGTGACTTTCTC
TATCTGGCAAGTTTGGCCTTAATATGTGGATTTACAGAACTCCTCTGGATTATCCAGATTAGTTCCCTCCTAGGGCTTCT
TGTCTTCACTATTTTCAAACCCAAGTCTATTCCCTACGTACCACTCCTTTTTCTTTCAAGTATTCCTATCATTCTGTGCA
TCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8EJ61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

49.057

99.065

0.486
  cclA/cilC Streptococcus pneumoniae Rx1

48.544

96.262

0.467
  cclA/cilC Streptococcus pneumoniae D39

48.544

96.262

0.467
  cclA/cilC Streptococcus pneumoniae R6

48.544

96.262

0.467
  cclA/cilC Streptococcus pneumoniae TIGR4

47.573

96.262

0.458
  cclA/cilC Streptococcus mitis NCTC 12261

44.811

99.065

0.444