Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYE   Type   Machinery gene
Locus tag   RJW55_RS00810 Genome accession   NZ_CP134473
Coordinates   134617..134910 (+) Length   97 a.a.
NCBI ID   WP_043026799.1    Uniprot ID   -
Organism   Streptococcus suis strain TMW_SS028     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 129617..139910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW55_RS00780 (RJW55_00780) - 130535..130894 (+) 360 WP_043026811.1 DUF1033 family protein -
  RJW55_RS00785 (RJW55_00785) - 131039..131989 (-) 951 WP_043026809.1 S66 peptidase family protein -
  RJW55_RS00790 (RJW55_00790) comYA 132075..133025 (+) 951 WP_043026808.1 competence type IV pilus ATPase ComGA Machinery gene
  RJW55_RS00795 (RJW55_00795) comYB 132937..133974 (+) 1038 WP_043026806.1 competence type IV pilus assembly protein ComGB Machinery gene
  RJW55_RS00800 (RJW55_00800) comYC 133976..134257 (+) 282 WP_043026803.1 competence type IV pilus major pilin ComGC Machinery gene
  RJW55_RS00805 (RJW55_00805) comGD 134238..134645 (+) 408 WP_043026801.1 competence type IV pilus minor pilin ComGD -
  RJW55_RS00810 (RJW55_00810) comYE 134617..134910 (+) 294 WP_043026799.1 competence type IV pilus minor pilin ComGE Machinery gene
  RJW55_RS00815 (RJW55_00815) comGF/cglF 134897..135331 (+) 435 WP_043026797.1 competence type IV pilus minor pilin ComGF Machinery gene
  RJW55_RS00820 (RJW55_00820) comGG 135309..135836 (+) 528 WP_043026795.1 competence type IV pilus minor pilin ComGG -
  RJW55_RS00825 (RJW55_00825) comYH 135893..136846 (+) 954 WP_043026794.1 class I SAM-dependent methyltransferase Machinery gene
  RJW55_RS00830 (RJW55_00830) - 136897..138084 (+) 1188 WP_043026792.1 acetate kinase -
  RJW55_RS00835 (RJW55_00835) - 138399..138950 (+) 552 WP_043026790.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10813.71 Da        Isoelectric Point: 9.0778

>NTDB_id=880146 RJW55_RS00810 WP_043026799.1 134617..134910(+) (comYE) [Streptococcus suis strain TMW_SS028]
MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDAGRRRQAWELEQQEVLNLAQMAVQTKQDDLALNGVAVQVQRTED
KIVVFHEGKEVLSVVKK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=880146 RJW55_RS00810 WP_043026799.1 134617..134910(+) (comYE) [Streptococcus suis strain TMW_SS028]
GTGGTCGCTATAAGAAAACAGAAGAATAAGGCTTATATCTTGCTAGAAAGTCTGGTTGCCCTTGCGACCCTAGTGACCAT
TTGTAGCTTGATTTTGTCAGCGGTGGATGCTGGTCGCAGGCGACAGGCTTGGGAATTGGAACAACAGGAAGTTCTCAATC
TGGCTCAGATGGCTGTCCAGACAAAACAAGATGACCTAGCCTTAAACGGAGTTGCAGTTCAGGTTCAACGAACAGAGGAT
AAGATTGTTGTTTTCCACGAGGGAAAGGAGGTTTTATCGGTTGTTAAAAAGTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

53.608

100

0.536
  comYE Streptococcus mutans UA159

53.608

100

0.536
  comGE/cglE Streptococcus pneumoniae Rx1

41.304

94.845

0.392
  comGE/cglE Streptococcus pneumoniae D39

41.304

94.845

0.392
  comGE/cglE Streptococcus pneumoniae R6

41.304

94.845

0.392
  comGE/cglE Streptococcus pneumoniae TIGR4

41.304

94.845

0.392
  comGE/cglE Streptococcus mitis SK321

40.217

94.845

0.381
  comGE/cglE Streptococcus mitis NCTC 12261

40.217

94.845

0.381