Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | RJW55_RS00825 | Genome accession | NZ_CP134473 |
| Coordinates | 135893..136846 (+) | Length | 317 a.a. |
| NCBI ID | WP_043026794.1 | Uniprot ID | A0A0Z8IB17 |
| Organism | Streptococcus suis strain TMW_SS028 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 130893..141846
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RJW55_RS00785 (RJW55_00785) | - | 131039..131989 (-) | 951 | WP_043026809.1 | S66 peptidase family protein | - |
| RJW55_RS00790 (RJW55_00790) | comYA | 132075..133025 (+) | 951 | WP_043026808.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| RJW55_RS00795 (RJW55_00795) | comYB | 132937..133974 (+) | 1038 | WP_043026806.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| RJW55_RS00800 (RJW55_00800) | comYC | 133976..134257 (+) | 282 | WP_043026803.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| RJW55_RS00805 (RJW55_00805) | comGD | 134238..134645 (+) | 408 | WP_043026801.1 | competence type IV pilus minor pilin ComGD | - |
| RJW55_RS00810 (RJW55_00810) | comYE | 134617..134910 (+) | 294 | WP_043026799.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| RJW55_RS00815 (RJW55_00815) | comGF/cglF | 134897..135331 (+) | 435 | WP_043026797.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| RJW55_RS00820 (RJW55_00820) | comGG | 135309..135836 (+) | 528 | WP_043026795.1 | competence type IV pilus minor pilin ComGG | - |
| RJW55_RS00825 (RJW55_00825) | comYH | 135893..136846 (+) | 954 | WP_043026794.1 | class I SAM-dependent methyltransferase | Machinery gene |
| RJW55_RS00830 (RJW55_00830) | - | 136897..138084 (+) | 1188 | WP_043026792.1 | acetate kinase | - |
| RJW55_RS00835 (RJW55_00835) | - | 138399..138950 (+) | 552 | WP_043026790.1 | folate family ECF transporter S component | - |
| RJW55_RS00840 (RJW55_00840) | - | 139006..140262 (+) | 1257 | WP_043026788.1 | folylpolyglutamate synthase/dihydrofolate synthase family protein | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35723.73 Da Isoelectric Point: 4.3089
>NTDB_id=880148 RJW55_RS00825 WP_043026794.1 135893..136846(+) (comYH) [Streptococcus suis strain TMW_SS028]
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVADQHETDLVVNNNQTLKQLDLTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVATQKVTVLEIGSGTGNLAQTILNASQKELDYLGIEVDDLLIDLSASIADVMQAD
ISFAQGDAVRPQILKESQIILADLPIGYYPDDQIASRYQVASSIEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEQANIVAMIALPPNLFGKAAMAKSIFVLQKKAARSLTPFVYPLQSLQEPEAIQNFMLNFKNWKQENAI
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVADQHETDLVVNNNQTLKQLDLTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVATQKVTVLEIGSGTGNLAQTILNASQKELDYLGIEVDDLLIDLSASIADVMQAD
ISFAQGDAVRPQILKESQIILADLPIGYYPDDQIASRYQVASSIEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEQANIVAMIALPPNLFGKAAMAKSIFVLQKKAARSLTPFVYPLQSLQEPEAIQNFMLNFKNWKQENAI
Nucleotide
Download Length: 954 bp
>NTDB_id=880148 RJW55_RS00825 WP_043026794.1 135893..136846(+) (comYH) [Streptococcus suis strain TMW_SS028]
ATGAATTTTGAAAAGATCGAACAGGCTTACGACCTGCTATTAGAAAACGTACAGACTATCCAAAACCAGCTAGGTACCAA
TATCTATGATGCCATGATTGAGCAAAATGCTGCTTACGTAGCTGATCAGCATGAGACGGACCTTGTTGTCAATAACAATC
AGACCTTGAAACAACTAGATTTAACCAAGGAAGAATGGCGTCGTGCCTACCAATTCTTGCTCATCAAGGCCAATCAGACT
GAACCCATGCAGTACAATCACCAGTTCACACCAGATTCTATCGGATTTATCCTATCTTTTCTAGTAGACCAATTGGTGGC
GACTCAAAAGGTGACGGTTCTGGAAATTGGTTCGGGGACAGGCAATCTAGCTCAGACCATTCTCAACGCCAGCCAGAAAG
AATTGGATTACTTGGGGATCGAAGTGGATGATCTCTTGATTGATTTGTCGGCAAGTATTGCGGATGTCATGCAGGCAGAT
ATTTCTTTTGCTCAGGGCGATGCGGTACGTCCGCAGATTTTGAAGGAAAGCCAAATCATTCTTGCGGATTTGCCGATTGG
TTACTATCCAGATGATCAGATTGCTAGCCGTTATCAGGTCGCCAGTTCAATTGAACATACCTACGCCCATCATTTACTCA
TGGAACAATCCCTCAAATATCTGGAAAAAGATGGCTTTGCGATTTTGTTGGCTCCAAATGATTTATTGACTAGTCCGCAA
AGCGATTTGCTGAAAGGTTGGTTACAGGAGCAAGCCAATATTGTTGCCATGATTGCCCTGCCACCAAATCTCTTTGGGAA
GGCTGCTATGGCCAAGTCTATTTTTGTCTTGCAAAAGAAAGCTGCAAGATCGTTGACGCCGTTTGTTTATCCCTTGCAAA
GTCTTCAAGAACCAGAAGCTATTCAGAACTTCATGCTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA
ATGAATTTTGAAAAGATCGAACAGGCTTACGACCTGCTATTAGAAAACGTACAGACTATCCAAAACCAGCTAGGTACCAA
TATCTATGATGCCATGATTGAGCAAAATGCTGCTTACGTAGCTGATCAGCATGAGACGGACCTTGTTGTCAATAACAATC
AGACCTTGAAACAACTAGATTTAACCAAGGAAGAATGGCGTCGTGCCTACCAATTCTTGCTCATCAAGGCCAATCAGACT
GAACCCATGCAGTACAATCACCAGTTCACACCAGATTCTATCGGATTTATCCTATCTTTTCTAGTAGACCAATTGGTGGC
GACTCAAAAGGTGACGGTTCTGGAAATTGGTTCGGGGACAGGCAATCTAGCTCAGACCATTCTCAACGCCAGCCAGAAAG
AATTGGATTACTTGGGGATCGAAGTGGATGATCTCTTGATTGATTTGTCGGCAAGTATTGCGGATGTCATGCAGGCAGAT
ATTTCTTTTGCTCAGGGCGATGCGGTACGTCCGCAGATTTTGAAGGAAAGCCAAATCATTCTTGCGGATTTGCCGATTGG
TTACTATCCAGATGATCAGATTGCTAGCCGTTATCAGGTCGCCAGTTCAATTGAACATACCTACGCCCATCATTTACTCA
TGGAACAATCCCTCAAATATCTGGAAAAAGATGGCTTTGCGATTTTGTTGGCTCCAAATGATTTATTGACTAGTCCGCAA
AGCGATTTGCTGAAAGGTTGGTTACAGGAGCAAGCCAATATTGTTGCCATGATTGCCCTGCCACCAAATCTCTTTGGGAA
GGCTGCTATGGCCAAGTCTATTTTTGTCTTGCAAAAGAAAGCTGCAAGATCGTTGACGCCGTTTGTTTATCCCTTGCAAA
GTCTTCAAGAACCAGAAGCTATTCAGAACTTCATGCTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA159 |
60.443 |
99.685 |
0.603 |
| comYH | Streptococcus mutans UA140 |
60.127 |
99.685 |
0.599 |