Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   RJW56_RS02195 Genome accession   NZ_CP134472
Coordinates   441589..442254 (+) Length   221 a.a.
NCBI ID   WP_024394376.1    Uniprot ID   -
Organism   Streptococcus suis strain 1522228     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 436589..447254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW56_RS02165 (RJW56_02165) - 437304..437675 (+) 372 WP_024394815.1 S1 RNA-binding domain-containing protein -
  RJW56_RS02170 (RJW56_02170) - 437701..437961 (-) 261 Protein_391 cysteine synthase A -
  RJW56_RS02175 (RJW56_02175) - 438008..438855 (+) 848 WP_141669245.1 IS630 family transposase -
  RJW56_RS02180 (RJW56_02180) - 438857..439525 (-) 669 Protein_393 PLP-dependent cysteine synthase family protein -
  RJW56_RS02185 (RJW56_02185) - 439615..440247 (-) 633 WP_172051312.1 YigZ family protein -
  RJW56_RS02190 (RJW56_02190) comFA/cflA 440304..441596 (+) 1293 WP_024394375.1 DEAD/DEAH box helicase Machinery gene
  RJW56_RS02195 (RJW56_02195) comFC/cflB 441589..442254 (+) 666 WP_024394376.1 ComF family protein Machinery gene
  RJW56_RS02200 (RJW56_02200) hpf 442331..442873 (+) 543 WP_004194117.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25821.60 Da        Isoelectric Point: 8.2726

>NTDB_id=880102 RJW56_RS02195 WP_024394376.1 441589..442254(+) (comFC/cflB) [Streptococcus suis strain 1522228]
MSNCLLCDQTMKNKTRFSDLIFFSKEKSGICEECFSTFEEIAEQHCPHCYKNGESESCKDCQYWQNQGKPVVHSALYQYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFPDYTIVPIPISQKRLSERGFNQVEGLLNATNIPYQSLLGKYESQKQS
SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=880102 RJW56_RS02195 WP_024394376.1 441589..442254(+) (comFC/cflB) [Streptococcus suis strain 1522228]
ATGTCTAATTGTCTATTGTGTGATCAAACTATGAAAAATAAAACAAGATTTTCAGATCTCATCTTCTTTAGTAAAGAAAA
ATCGGGCATCTGTGAAGAATGTTTTTCGACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAATGGGG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAACCAGTTGTCCACTCAGCTTTGTACCAATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG
AATAGCGTTAAGCCAATTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTATCAGAACGCGGTTTTA
ATCAAGTGGAAGGACTTTTGAATGCTACAAATATTCCCTATCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCA
TCTAAAAATCGTGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATATACAACAGGAGCTACAATCCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae TIGR4

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae Rx1

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae D39

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae R6

49.083

98.643

0.484
  comFC/cflB Streptococcus mitis NCTC 12261

49.083

98.643

0.484