Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | RIU93_RS00395 | Genome accession | NZ_CP134464 |
| Coordinates | 75441..75956 (+) | Length | 171 a.a. |
| NCBI ID | WP_002466536.1 | Uniprot ID | A0A2V3ZFL8 |
| Organism | Staphylococcus warneri strain 2023.05 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 75441..88181 | 75441..75956 | within | 0 |
Gene organization within MGE regions
Location: 75441..88181
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RIU93_RS00395 (RIU93_00395) | ssbA | 75441..75956 (+) | 516 | WP_002466536.1 | single-stranded DNA-binding protein | Machinery gene |
| RIU93_RS00400 (RIU93_00400) | rpsR | 76001..76243 (+) | 243 | WP_002451519.1 | 30S ribosomal protein S18 | - |
| RIU93_RS00405 (RIU93_00405) | - | 76419..77252 (-) | 834 | WP_015365404.1 | KilA-N domain-containing protein | - |
| RIU93_RS00410 (RIU93_00410) | - | 77274..77657 (-) | 384 | WP_015365403.1 | hypothetical protein | - |
| RIU93_RS00415 (RIU93_00415) | - | 77659..78876 (-) | 1218 | WP_311095308.1 | site-specific integrase | - |
| RIU93_RS00420 (RIU93_00420) | - | 78898..79035 (-) | 138 | WP_186312890.1 | hypothetical protein | - |
| RIU93_RS00425 (RIU93_00425) | - | 79150..79758 (-) | 609 | WP_311095309.1 | helix-turn-helix transcriptional regulator | - |
| RIU93_RS00430 (RIU93_00430) | - | 79909..80070 (+) | 162 | WP_002468618.1 | helix-turn-helix domain-containing protein | - |
| RIU93_RS00435 (RIU93_00435) | - | 80075..80347 (+) | 273 | WP_311095310.1 | helix-turn-helix domain-containing protein | - |
| RIU93_RS00440 (RIU93_00440) | - | 80360..80497 (+) | 138 | WP_311095311.1 | hypothetical protein | - |
| RIU93_RS00445 (RIU93_00445) | tscA | 80499..80699 (+) | 201 | Protein_87 | type II toxin-antitoxin system antitoxin TscA | - |
| RIU93_RS00450 (RIU93_00450) | tscT | 81056..81355 (+) | 300 | WP_311095312.1 | type II toxin-antitoxin system toxin TscT | - |
| RIU93_RS00455 (RIU93_00455) | - | 81446..82318 (+) | 873 | WP_311095313.1 | primase alpha helix C-terminal domain-containing protein | - |
| RIU93_RS00460 (RIU93_00460) | - | 82333..84042 (+) | 1710 | WP_311095314.1 | DUF927 domain-containing protein | - |
| RIU93_RS00465 (RIU93_00465) | - | 84399..84764 (+) | 366 | WP_311095315.1 | hypothetical protein | - |
| RIU93_RS00470 (RIU93_00470) | - | 84778..85419 (+) | 642 | WP_311095419.1 | pathogenicity island protein | - |
| RIU93_RS00475 (RIU93_00475) | - | 85705..86049 (+) | 345 | WP_311095316.1 | pathogenicity island protein | - |
| RIU93_RS00480 (RIU93_00480) | - | 86061..86822 (+) | 762 | WP_311095317.1 | hypothetical protein | - |
| RIU93_RS00485 (RIU93_00485) | - | 86836..87420 (+) | 585 | WP_311095318.1 | pathogenicity island protein | - |
| RIU93_RS00490 (RIU93_00490) | - | 87425..87643 (+) | 219 | WP_311095319.1 | capsid morphogenesis B protein | - |
| RIU93_RS00495 (RIU93_00495) | - | 87696..88178 (+) | 483 | Protein_97 | terminase small subunit | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 18856.42 Da Isoelectric Point: 4.7410
>NTDB_id=880048 RIU93_RS00395 WP_002466536.1 75441..75956(+) (ssbA) [Staphylococcus warneri strain 2023.05]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQNGGGQRSQNNEFQDYGQGFGGQQSGQNTSYNNNSSKPNSNQSDNPFANANG
PIDISDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQNGGGQRSQNNEFQDYGQGFGGQQSGQNTSYNNNSSKPNSNQSDNPFANANG
PIDISDDDLPF
Nucleotide
Download Length: 516 bp
>NTDB_id=880048 RIU93_RS00395 WP_002466536.1 75441..75956(+) (ssbA) [Staphylococcus warneri strain 2023.05]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCAGATTTCATTAACTGTGTTGTTT
TCAGAAGACAAGCAGAAAATGTAAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTCGTTTGTGACAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAAAATGGCGGTGGCCAACGTTCACAAAACAACGAATTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAG
GACAAAATACTTCGTATAACAACAATTCATCAAAACCTAATTCAAATCAATCAGATAATCCATTTGCGAATGCGAACGGA
CCTATTGATATTAGTGATGATGATTTACCATTCTAA
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCAGATTTCATTAACTGTGTTGTTT
TCAGAAGACAAGCAGAAAATGTAAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTCGTTTGTGACAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAAAATGGCGGTGGCCAACGTTCACAAAACAACGAATTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAG
GACAAAATACTTCGTATAACAACAATTCATCAAAACCTAATTCAAATCAATCAGATAATCCATTTGCGAATGCGAACGGA
CCTATTGATATTAGTGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
61.453 |
100 |
0.643 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.601 |
100 |
0.532 |
| ssb | Glaesserella parasuis strain SC1401 |
36.313 |
100 |
0.38 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.377 |
61.988 |
0.374 |