Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RJT46_RS25495 Genome accession   NZ_CP134463
Coordinates   5277604..5278095 (-) Length   163 a.a.
NCBI ID   WP_013312801.1    Uniprot ID   A0A0M1Q500
Organism   Paenibacillus polymyxa strain B8-12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5272604..5283095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJT46_RS25475 opp4C 5273081..5274004 (-) 924 WP_311080856.1 oligopeptide ABC transporter permease -
  RJT46_RS25480 - 5274016..5274978 (-) 963 WP_311080857.1 ABC transporter permease -
  RJT46_RS25485 - 5275047..5276786 (-) 1740 WP_311080858.1 ABC transporter substrate-binding protein -
  RJT46_RS25490 rpsR 5277310..5277582 (-) 273 WP_013312800.1 30S ribosomal protein S18 -
  RJT46_RS25495 ssbA 5277604..5278095 (-) 492 WP_013312801.1 single-stranded DNA-binding protein Machinery gene
  RJT46_RS25500 rpsF 5278145..5278429 (-) 285 WP_013312802.1 30S ribosomal protein S6 -
  RJT46_RS25505 - 5278748..5278942 (+) 195 WP_013312803.1 YjzC family protein -
  RJT46_RS25510 - 5279309..5279626 (+) 318 WP_013312804.1 hypothetical protein -
  RJT46_RS25520 - 5280017..5280241 (-) 225 WP_025723137.1 DUF951 domain-containing protein -
  RJT46_RS25525 - 5280231..5281181 (-) 951 WP_311080859.1 mechanosensitive ion channel family protein -
  RJT46_RS25530 yyaC 5281457..5282062 (+) 606 WP_311080860.1 spore protease YyaC -
  RJT46_RS25535 - 5282016..5282537 (-) 522 WP_311080861.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17852.55 Da        Isoelectric Point: 4.8369

>NTDB_id=880047 RJT46_RS25495 WP_013312801.1 5277604..5278095(-) (ssbA) [Paenibacillus polymyxa strain B8-12]
MLNRVILIGRLTKDPELRYTPSGVAVTQFTLAVDRPFTSQGGEREADFLPIVTWRQLAETCANYLRKGRLTAVEGRVQVR
NYENNEGKRVYVTEIVADNVRFLESNRDGGNGGGNSGGAAREESPFGGGNSNSGRGNNNSRNNQDPFSDDGKPIDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=880047 RJT46_RS25495 WP_013312801.1 5277604..5278095(-) (ssbA) [Paenibacillus polymyxa strain B8-12]
TTGTTGAACCGTGTCATTCTGATCGGTCGTTTGACCAAAGATCCAGAGCTGCGCTATACACCGTCTGGTGTAGCAGTAAC
CCAGTTCACCCTGGCTGTAGACCGTCCGTTTACGAGTCAAGGCGGCGAACGGGAAGCGGATTTCTTGCCGATCGTAACCT
GGCGTCAGCTTGCTGAAACATGCGCTAACTATCTTCGCAAAGGTCGTTTAACGGCTGTTGAAGGCCGTGTTCAGGTGCGT
AATTATGAGAACAATGAAGGAAAACGTGTATACGTGACTGAAATTGTAGCTGATAATGTGCGTTTCTTGGAATCTAACCG
CGATGGCGGTAATGGTGGCGGCAATAGCGGTGGAGCTGCGCGTGAGGAGTCTCCTTTCGGAGGCGGTAACAGCAATAGTG
GACGCGGGAATAATAACTCGCGAAACAATCAGGATCCTTTTTCCGATGACGGAAAACCGATCGATATTTCGGATGATGAT
TTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M1Q500

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.382

100

0.62
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.528
  ssb Neisseria meningitidis MC58

35.165

100

0.393
  ssb Neisseria gonorrhoeae MS11

34.078

100

0.374