Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | RKE57_RS04660 | Genome accession | NZ_CP134450 |
| Coordinates | 1000114..1001277 (+) | Length | 387 a.a. |
| NCBI ID | WP_049434422.1 | Uniprot ID | A0AA43BPT5 |
| Organism | Stenotrophomonas geniculata strain BR23 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 995114..1006277
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RKE57_RS04630 (RKE57_04630) | soxR | 995248..995682 (+) | 435 | WP_010483703.1 | redox-sensitive transcriptional activator SoxR | - |
| RKE57_RS04635 (RKE57_04635) | - | 995756..996358 (-) | 603 | WP_010483701.1 | short chain dehydrogenase | - |
| RKE57_RS04640 (RKE57_04640) | - | 996457..997332 (+) | 876 | WP_029379886.1 | LysR family transcriptional regulator | - |
| RKE57_RS04645 (RKE57_04645) | proC | 997392..998213 (-) | 822 | WP_043398301.1 | pyrroline-5-carboxylate reductase | - |
| RKE57_RS04650 (RKE57_04650) | - | 998232..998909 (-) | 678 | WP_043398305.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| RKE57_RS04655 (RKE57_04655) | pilT | 998997..1000034 (+) | 1038 | WP_006422551.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| RKE57_RS04660 (RKE57_04660) | pilU | 1000114..1001277 (+) | 1164 | WP_049434422.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| RKE57_RS04665 (RKE57_04665) | - | 1001426..1002409 (+) | 984 | WP_272774176.1 | aldo/keto reductase | - |
| RKE57_RS04670 (RKE57_04670) | - | 1002452..1003348 (-) | 897 | WP_311068975.1 | LysR family transcriptional regulator | - |
| RKE57_RS04675 (RKE57_04675) | - | 1003809..1004060 (+) | 252 | WP_049455542.1 | DUF4287 domain-containing protein | - |
| RKE57_RS04680 (RKE57_04680) | - | 1004130..1004837 (+) | 708 | WP_029379885.1 | YitT family protein | - |
| RKE57_RS04685 (RKE57_04685) | - | 1004924..1005469 (-) | 546 | WP_311068976.1 | DNA-3-methyladenine glycosylase I | - |
Sequence
Protein
Download Length: 387 a.a. Molecular weight: 43186.63 Da Isoelectric Point: 6.6615
>NTDB_id=880005 RKE57_RS04660 WP_049434422.1 1000114..1001277(+) (pilU) [Stenotrophomonas geniculata strain BR23]
MPHWEPAVNTTATTIDFTSFLKLMAHQRASDLFITAGMPPAMKVNGKISPITQTPLTPQQSRDLVLNVMTPAQREEFEKT
HECNFAIGLSGVGRFRVSCFYQRNQVGMVLRRIETRIPTVEELSLPPIIKTLAMTKRGIILFVGATGTGKSTSLAAMIGY
RNQNSTGHIITIEDPIEFVHKHEGCIITQREVGIDTDSWEAALKNTLRQAPDVIMIGEVRTREGMDHAIAFAETGHLVLC
TLHANNANQAMDRIVNFFPEDRRNQLLMDLSLNLKGVVAQQLIPSPDGRSRKVAMEILLGTPLVQDYIRDGEIHKLKEVM
KDSVQLGMKTFDQSLFELYQAGEISYEDALRYADSQNEVRLRIKLSQGGDARTLSQGLDGVEISEIR
MPHWEPAVNTTATTIDFTSFLKLMAHQRASDLFITAGMPPAMKVNGKISPITQTPLTPQQSRDLVLNVMTPAQREEFEKT
HECNFAIGLSGVGRFRVSCFYQRNQVGMVLRRIETRIPTVEELSLPPIIKTLAMTKRGIILFVGATGTGKSTSLAAMIGY
RNQNSTGHIITIEDPIEFVHKHEGCIITQREVGIDTDSWEAALKNTLRQAPDVIMIGEVRTREGMDHAIAFAETGHLVLC
TLHANNANQAMDRIVNFFPEDRRNQLLMDLSLNLKGVVAQQLIPSPDGRSRKVAMEILLGTPLVQDYIRDGEIHKLKEVM
KDSVQLGMKTFDQSLFELYQAGEISYEDALRYADSQNEVRLRIKLSQGGDARTLSQGLDGVEISEIR
Nucleotide
Download Length: 1164 bp
>NTDB_id=880005 RKE57_RS04660 WP_049434422.1 1000114..1001277(+) (pilU) [Stenotrophomonas geniculata strain BR23]
ATGCCCCATTGGGAGCCCGCCGTGAACACCACCGCGACCACCATCGATTTCACTTCGTTCCTCAAGCTGATGGCGCACCA
GCGCGCCTCGGACCTGTTCATCACTGCGGGCATGCCGCCGGCGATGAAGGTCAACGGCAAGATCTCGCCGATCACGCAGA
CTCCGCTCACGCCGCAGCAGAGCCGCGACCTGGTCCTCAACGTGATGACCCCGGCGCAGCGCGAGGAATTCGAGAAGACC
CACGAATGCAACTTCGCCATCGGCCTGTCCGGTGTCGGTCGTTTCCGCGTGAGCTGCTTCTACCAGCGCAACCAGGTGGG
CATGGTGCTGCGTCGCATCGAGACGCGCATTCCGACCGTGGAAGAGTTGAGCCTGCCGCCGATCATCAAGACGCTGGCGA
TGACCAAGCGCGGCATCATCCTGTTCGTCGGTGCCACCGGCACCGGTAAGTCAACGTCGCTGGCGGCGATGATCGGTTAC
CGCAACCAGAACTCGACCGGCCACATCATCACCATCGAAGACCCGATCGAATTCGTGCACAAGCACGAGGGCTGCATCAT
CACCCAGCGTGAAGTCGGCATCGATACCGACAGCTGGGAAGCGGCGCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGA
TCATGATCGGCGAAGTGCGTACCCGCGAAGGCATGGACCATGCCATCGCGTTCGCCGAAACCGGCCACCTGGTGCTGTGC
ACCCTGCATGCCAACAACGCCAACCAGGCGATGGACCGCATCGTCAACTTCTTCCCGGAAGACCGCCGCAACCAGCTGCT
GATGGACCTGTCGCTGAATCTCAAAGGCGTGGTCGCTCAGCAGCTGATTCCTTCGCCCGATGGCCGCTCGCGCAAGGTGG
CGATGGAGATCCTGCTGGGCACGCCGCTGGTGCAGGACTACATCCGCGATGGCGAGATTCACAAGCTGAAGGAAGTGATG
AAGGACTCGGTCCAGCTGGGCATGAAGACCTTCGACCAGAGCCTGTTCGAGCTGTACCAGGCCGGTGAGATCAGCTACGA
GGACGCACTGCGCTACGCCGATTCGCAGAACGAGGTACGCCTGCGCATCAAGCTCAGCCAGGGCGGCGACGCGCGCACCC
TGTCGCAGGGGCTGGATGGCGTGGAGATCTCCGAGATCCGGTGA
ATGCCCCATTGGGAGCCCGCCGTGAACACCACCGCGACCACCATCGATTTCACTTCGTTCCTCAAGCTGATGGCGCACCA
GCGCGCCTCGGACCTGTTCATCACTGCGGGCATGCCGCCGGCGATGAAGGTCAACGGCAAGATCTCGCCGATCACGCAGA
CTCCGCTCACGCCGCAGCAGAGCCGCGACCTGGTCCTCAACGTGATGACCCCGGCGCAGCGCGAGGAATTCGAGAAGACC
CACGAATGCAACTTCGCCATCGGCCTGTCCGGTGTCGGTCGTTTCCGCGTGAGCTGCTTCTACCAGCGCAACCAGGTGGG
CATGGTGCTGCGTCGCATCGAGACGCGCATTCCGACCGTGGAAGAGTTGAGCCTGCCGCCGATCATCAAGACGCTGGCGA
TGACCAAGCGCGGCATCATCCTGTTCGTCGGTGCCACCGGCACCGGTAAGTCAACGTCGCTGGCGGCGATGATCGGTTAC
CGCAACCAGAACTCGACCGGCCACATCATCACCATCGAAGACCCGATCGAATTCGTGCACAAGCACGAGGGCTGCATCAT
CACCCAGCGTGAAGTCGGCATCGATACCGACAGCTGGGAAGCGGCGCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGA
TCATGATCGGCGAAGTGCGTACCCGCGAAGGCATGGACCATGCCATCGCGTTCGCCGAAACCGGCCACCTGGTGCTGTGC
ACCCTGCATGCCAACAACGCCAACCAGGCGATGGACCGCATCGTCAACTTCTTCCCGGAAGACCGCCGCAACCAGCTGCT
GATGGACCTGTCGCTGAATCTCAAAGGCGTGGTCGCTCAGCAGCTGATTCCTTCGCCCGATGGCCGCTCGCGCAAGGTGG
CGATGGAGATCCTGCTGGGCACGCCGCTGGTGCAGGACTACATCCGCGATGGCGAGATTCACAAGCTGAAGGAAGTGATG
AAGGACTCGGTCCAGCTGGGCATGAAGACCTTCGACCAGAGCCTGTTCGAGCTGTACCAGGCCGGTGAGATCAGCTACGA
GGACGCACTGCGCTACGCCGATTCGCAGAACGAGGTACGCCTGCGCATCAAGCTCAGCCAGGGCGGCGACGCGCGCACCC
TGTCGCAGGGGCTGGATGGCGTGGAGATCTCCGAGATCCGGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
67.575 |
94.832 |
0.641 |
| pilU | Acinetobacter baylyi ADP1 |
63.866 |
92.248 |
0.589 |
| pilU | Vibrio cholerae strain A1552 |
53.371 |
91.99 |
0.491 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
43.099 |
91.731 |
0.395 |