Detailed information NTG0879654

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: RJD40_RS13065
• Genome accession: NZ_CP134280
• Coordinates: 2893375..2894358 (-)
• Length: 327 a.a.
• NCBI ID: WP_065430959.1
• Uniprot ID: -
• Organism: Vibrio scophthalmi strain 21FBVib0106
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2888375..2899358

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RJD40_RS13040 (RJD40_13040)	rimM	2888419..2888973 (-)	555	WP_005593970.1	ribosome maturation factor RimM	-
RJD40_RS13045 (RJD40_13045)	rpsP	2888998..2889246 (-)	249	WP_005593968.1	30S ribosomal protein S16	-
RJD40_RS13050 (RJD40_13050)	ffh	2889458..2890837 (-)	1380	WP_005593966.1	signal recognition particle protein	-
RJD40_RS13055 (RJD40_13055)	-	2891020..2891814 (+)	795	WP_418113555.1	cytochrome C assembly family protein	-
RJD40_RS13060 (RJD40_13060)	-	2891943..2893217 (+)	1275	WP_418113556.1	HlyC/CorC family transporter	-
RJD40_RS13065 (RJD40_13065)	rpoS	2893375..2894358 (-)	984	WP_065430959.1	RNA polymerase sigma factor RpoS	Regulator
RJD40_RS13070 (RJD40_13070)	nlpD	2894436..2895356 (-)	921	WP_005598103.1	murein hydrolase activator NlpD	-
RJD40_RS13075 (RJD40_13075)	-	2895359..2895985 (-)	627	WP_009387609.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
RJD40_RS13080 (RJD40_13080)	surE	2895989..2896732 (-)	744	WP_418114321.1	5'/3'-nucleotidase SurE	-
RJD40_RS13085 (RJD40_13085)	truD	2896759..2897841 (-)	1083	WP_418113557.1	tRNA pseudouridine(13) synthase TruD	-
RJD40_RS13090 (RJD40_13090)	ispF	2897913..2898392 (-)	480	WP_040758003.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
RJD40_RS13095 (RJD40_13095)	ispD	2898396..2899118 (-)	723	WP_065430962.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37381.46 Da
• Isoelectric Point: 4.7809

>NTDB_id=879654 RJD40_RS13065 WP_065430959.1 2893375..2894358(-) (rpoS) [Vibrio scophthalmi strain 21FBVib0106]
MSMSNTATKVEEFDLNNMETLEVEAQTAKKSASANAAAKEEYEVSNKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAIQLDKPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDVKHSDP
EVSTQDDDIKDSLINWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILIKQGLSMEN
LFSVEDD

Nucleotide

• Length: 984 bp

>NTDB_id=879654 RJD40_RS13065 WP_065430959.1 2893375..2894358(-) (rpoS) [Vibrio scophthalmi strain 21FBVib0106]
ATGAGTATGAGCAATACAGCAACAAAAGTTGAAGAATTTGATCTCAATAACATGGAAACGTTAGAGGTTGAAGCACAAAC
CGCAAAAAAATCCGCATCAGCTAATGCAGCTGCGAAAGAAGAGTATGAGGTCTCGAATAAGAGCCTTGATGCGACGCAGC
TTTACCTTGGCGAAATCGGCTTTTCACCACTACTTACCGCAGAAGAAGAAGTGCTTTATGCTCGCCGTGCCTTGCGTGGT
GATGAAGCAGCGCGTAAACGTATGATCGAAAGTAACCTGCGTTTGGTGGTGAAGATTTCTCGTCGTTACAGCAATCGTGG
TCTTGCACTGCTTGATTTGATTGAAGAAGGTAACTTAGGTCTGATCCGAGCGGTTGAAAAATTTGATCCAGAGCGTGGCT
TCCGTTTTTCAACGTATGCTACTTGGTGGATTCGTCAAACCATTGAACGTGCGTTGATGAACCAAACCCGCACAATTCGT
CTACCGATTCACGTCGTTAAAGAGCTGAATATTTATCTGCGTACCGCTCGCGAGCTTTCACAAAAGCTTGACCATGAGCC
AACGGCAGAAGAGATTGCAATTCAATTAGATAAGCCAGTTGATGATGTGAGTAAAATGCTACGCCTGAATGAGCGTATTA
GTTCGGTTGATACCCCAATTGGTGGTGATGGCGAAAAAGCACTGTTGGACATTATTCCTGATGTGAAGCATTCAGATCCT
GAAGTATCAACACAAGATGATGATATTAAGGATTCATTGATTAATTGGCTTGATGAGTTAAACCCTAAGCAAAAAGAAGT
TTTAGCGCGCCGTTTTGGTCTGCTTGGGTATGAACCATCAACACTTGAAGAAGTGGGACGCGAGATTAATCTAACACGTG
AGCGTGTGCGTCAGATTCAAGTAGAAGGTCTACGTCGTTTACGTGAAATCTTGATTAAACAAGGTTTGAGCATGGAAAAC
CTGTTCAGCGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.234	100	0.85