Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   RJD40_RS04935 Genome accession   NZ_CP134280
Coordinates   1031408..1031722 (+) Length   104 a.a.
NCBI ID   WP_418114034.1    Uniprot ID   -
Organism   Vibrio scophthalmi strain 21FBVib0106     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1026408..1036722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD40_RS04920 (RJD40_04920) lon 1026422..1028773 (+) 2352 WP_005595880.1 endopeptidase La -
  RJD40_RS04925 (RJD40_04925) - 1028967..1029239 (+) 273 WP_005595882.1 HU family DNA-binding protein -
  RJD40_RS04930 (RJD40_04930) ppiD 1029411..1031270 (+) 1860 WP_418114033.1 peptidylprolyl isomerase -
  RJD40_RS04935 (RJD40_04935) comEA 1031408..1031722 (+) 315 WP_418114034.1 ComEA family DNA-binding protein Machinery gene
  RJD40_RS04940 (RJD40_04940) cmk 1032002..1032682 (+) 681 WP_005595886.1 (d)CMP kinase -
  RJD40_RS04945 (RJD40_04945) rpsA 1032791..1034461 (+) 1671 WP_005595887.1 30S ribosomal protein S1 -
  RJD40_RS04950 (RJD40_04950) ihfB 1034664..1034945 (+) 282 WP_005595888.1 integration host factor subunit beta -
  RJD40_RS04955 (RJD40_04955) - 1035079..1035357 (+) 279 WP_005595889.1 LapA family protein -
  RJD40_RS04960 (RJD40_04960) lapB 1035383..1036552 (+) 1170 WP_009388068.1 lipopolysaccharide assembly protein LapB -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 11146.79 Da        Isoelectric Point: 4.5557

>NTDB_id=879639 RJD40_RS04935 WP_418114034.1 1031408..1031722(+) (comEA) [Vibrio scophthalmi strain 21FBVib0106]
MNIKALVLSVALTFSLPFTAVLAEQQPDSPPENPKYDGIEIVVNVNQASAQEIADLLKGIGLTKAQAIVDYRDQQGPFKR
IEDLAKVSGVGEATVAKNVGRIEL

Nucleotide


Download         Length: 315 bp        

>NTDB_id=879639 RJD40_RS04935 WP_418114034.1 1031408..1031722(+) (comEA) [Vibrio scophthalmi strain 21FBVib0106]
ATGAATATCAAAGCGCTTGTTCTTTCTGTTGCACTCACTTTTTCGCTTCCTTTTACTGCCGTCTTGGCAGAACAACAACC
AGATTCTCCACCTGAAAACCCAAAATATGATGGCATTGAAATTGTCGTTAACGTTAATCAAGCATCGGCACAAGAAATAG
CGGATTTGCTCAAGGGCATCGGCTTAACTAAAGCGCAGGCGATTGTCGATTATCGTGACCAACAAGGGCCATTTAAGCGA
ATTGAAGATCTCGCGAAAGTAAGCGGAGTGGGTGAGGCTACTGTGGCCAAAAATGTTGGCCGGATTGAACTCTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

50.962

100

0.51
  comEA Vibrio cholerae strain A1552

50.962

100

0.51
  comEA Vibrio campbellii strain DS40M4

52.577

93.269

0.49
  comEA Vibrio parahaemolyticus RIMD 2210633

50.505

95.192

0.481