Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RIN60_RS21055 Genome accession   NZ_CP134165
Coordinates   4473304..4473834 (-) Length   176 a.a.
NCBI ID   WP_061283355.1    Uniprot ID   A0AAW9CAI1
Organism   Kluyvera cryocrescens strain 1.8.5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4468304..4478834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIN60_RS21040 (RIN60_21040) - 4469380..4470087 (-) 708 WP_313843146.1 GntR family transcriptional regulator -
  RIN60_RS21045 (RIN60_21045) oxlT 4470102..4471406 (-) 1305 WP_174522458.1 oxalate/formate MFS antiporter -
  RIN60_RS21050 (RIN60_21050) - 4471454..4473061 (-) 1608 WP_244886212.1 gamma-glutamyltransferase family protein -
  RIN60_RS21055 (RIN60_21055) ssb 4473304..4473834 (-) 531 WP_061283355.1 single-stranded DNA-binding protein SSB1 Machinery gene
  RIN60_RS21060 (RIN60_21060) uvrA 4474087..4476912 (+) 2826 WP_061283356.1 excinuclease ABC subunit UvrA -
  RIN60_RS21065 (RIN60_21065) - 4476913..4477266 (-) 354 WP_061283357.1 MmcQ/YjbR family DNA-binding protein -
  RIN60_RS21070 (RIN60_21070) aphA 4477398..4478111 (-) 714 WP_061283358.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18819.84 Da        Isoelectric Point: 5.2456

>NTDB_id=878928 RIN60_RS21055 WP_061283355.1 4473304..4473834(-) (ssb) [Kluyvera cryocrescens strain 1.8.5]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAAPAGGGQQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=878928 RIN60_RS21055 WP_061283355.1 4473304..4473834(-) (ssb) [Kluyvera cryocrescens strain 1.8.5]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAACCTGGGCCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGTGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAGCTGGCGGAAGTTGCGGGTGAATACCTGCGTAAAGGTTCTCAGGTCTACATC
GAAGGCCAACTGCGTACCCGTAAATGGACCGATCAGTCCGGCGCAGAAAAATACACCACTGAAGTGGTGGTTAACGTCGG
CGGTACCATGCAGATGCTTGGTGGCCGTCAGGGCGGCGGCGCAGCACCAGCAGGTGGCGGCCAGCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCACAGTCCCGTCCGCAGCAGCAGTCCGCTCCG
GCACCGTCTAACGAACCGCCAATGGACTTCGACGACGACATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.761
  ssb Glaesserella parasuis strain SC1401

56.757

100

0.597
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472