Detailed information    

insolico Bioinformatically predicted

Overview

Name   micB   Type   Regulator
Locus tag   RIN70_RS07285 Genome accession   NZ_CP134147
Coordinates   1439011..1440363 (-) Length   450 a.a.
NCBI ID   WP_049497363.1    Uniprot ID   -
Organism   Streptococcus parasanguinis strain 30.8.10     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1434011..1445363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIN70_RS07255 (RIN70_07255) - 1434569..1434955 (-) 387 WP_151190856.1 YbaN family protein -
  RIN70_RS07260 (RIN70_07260) - 1435070..1435570 (-) 501 WP_313790505.1 hypothetical protein -
  RIN70_RS07265 (RIN70_07265) - 1435571..1436620 (-) 1050 WP_313790506.1 hypothetical protein -
  RIN70_RS07270 (RIN70_07270) - 1436716..1437375 (-) 660 WP_313790507.1 DUF443 family protein -
  RIN70_RS07275 (RIN70_07275) - 1437525..1438052 (-) 528 WP_313790508.1 hypothetical protein -
  RIN70_RS07280 (RIN70_07280) vicX 1438194..1439003 (-) 810 WP_049475139.1 MBL fold metallo-hydrolase Regulator
  RIN70_RS07285 (RIN70_07285) micB 1439011..1440363 (-) 1353 WP_049497363.1 cell wall metabolism sensor histidine kinase VicK Regulator
  RIN70_RS07290 (RIN70_07290) micA 1440356..1441057 (-) 702 WP_003008151.1 response regulator YycF Regulator
  RIN70_RS07295 (RIN70_07295) - 1441942..1442991 (+) 1050 WP_195623466.1 DUF389 domain-containing protein -
  RIN70_RS07300 (RIN70_07300) thrS 1443203..1445146 (-) 1944 WP_195623467.1 threonine--tRNA ligase -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 51085.28 Da        Isoelectric Point: 4.5621

>NTDB_id=878878 RIN70_RS07285 WP_049497363.1 1439011..1440363(-) (micB) [Streptococcus parasanguinis strain 30.8.10]
MIDQLKQFVMSSNFVFVLITVGFIIVVALLLLENRRDNIKLRQLNAKIKDLIAGDYSEVVDMQGSPELTDMTNSINDLSE
VIRLTHENLEQETKRLTSILSYMTDGVLATNRRGQIIMVNEMAAKQLNVNPDEVLNTSILDLLSLGDDYDLRSLITEVPE
LTIDSQDENGEYLSLRVRFALIRRESGFISGLVAVLHDTTEQDKEERERRLFVSNVSHELRTPLTSVKSYLEALDDGALS
EPVAPDFVKVSLNETNRMMRMVTDLLSLSRIDNETSQLDIELTNFTAFITFILNRFDKIKSQAQEDTKKYELIREYPITP
IWVEIDTDKMTQVIDNILNNAIKYSPDGGKIKVGMKTTDAQLIISISDEGLGIPKKDLPRIFDRFYRVDKARSRAQGGTG
LGLAIAKEIVKQHKGFIWAKSEYGKGSTFTIVLPYDKDAIKDDWDTEEEE

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=878878 RIN70_RS07285 WP_049497363.1 1439011..1440363(-) (micB) [Streptococcus parasanguinis strain 30.8.10]
ATGATTGATCAACTAAAACAATTTGTAATGTCGTCGAACTTTGTCTTTGTTCTGATTACGGTTGGGTTTATCATTGTGGT
AGCCTTGCTTTTGCTAGAAAACCGTAGGGACAATATCAAGCTCAGACAATTAAACGCCAAAATTAAGGATCTGATTGCAG
GGGACTATTCCGAAGTGGTCGACATGCAAGGAAGTCCAGAACTGACGGATATGACCAATAGTATCAATGATCTGTCGGAG
GTTATTCGCCTGACGCATGAAAACTTGGAACAAGAAACCAAGCGTTTGACCAGTATCCTTTCTTACATGACAGATGGGGT
GCTTGCGACCAATAGACGCGGTCAGATCATCATGGTCAATGAAATGGCAGCCAAGCAATTGAATGTTAATCCAGATGAGG
TGCTCAATACCAGTATTCTGGATTTGCTTTCGCTTGGAGATGACTATGATCTGCGAAGCTTGATTACTGAAGTACCAGAG
TTAACCATCGATTCCCAGGATGAAAACGGGGAGTACCTCAGCCTTCGTGTGCGCTTTGCCTTGATTCGTCGTGAGTCAGG
TTTTATCTCTGGTCTGGTAGCTGTCTTGCACGATACGACAGAGCAGGACAAGGAAGAGCGGGAACGTCGTCTCTTTGTCT
CTAATGTGAGCCATGAATTGCGGACTCCCTTGACCAGTGTGAAATCCTATCTGGAAGCCCTGGACGATGGCGCTTTGTCA
GAGCCGGTAGCACCAGATTTTGTCAAAGTTTCACTCAATGAAACCAATCGCATGATGCGCATGGTCACAGATCTATTGAG
CTTGTCACGAATCGATAATGAAACCAGTCAGTTGGACATCGAGTTGACCAACTTTACGGCCTTTATCACCTTTATTTTGA
ACCGGTTTGATAAGATCAAGAGTCAAGCGCAAGAAGATACCAAGAAGTATGAACTGATCCGGGAATACCCAATCACCCCG
ATCTGGGTTGAAATTGATACGGATAAAATGACCCAGGTAATCGACAATATCTTGAACAATGCCATCAAGTACTCACCTGA
TGGTGGAAAGATCAAGGTAGGGATGAAAACGACAGATGCCCAGTTGATTATCTCCATCTCAGATGAGGGCTTGGGGATTC
CAAAGAAAGACTTGCCACGCATTTTTGATCGCTTTTACCGAGTGGATAAGGCGCGTAGCCGGGCCCAAGGTGGGACTGGT
CTAGGCTTAGCCATTGCTAAGGAGATCGTGAAGCAACACAAAGGCTTTATTTGGGCCAAGAGTGAATATGGCAAGGGATC
TACCTTTACCATTGTCTTGCCGTACGACAAAGACGCTATTAAAGACGACTGGGATACAGAAGAGGAAGAATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(326-436)

His Kinase A (phospho-acceptor) domain (HisKA)

(209-273)

PAS fold (PAS)

(96-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micB Streptococcus pneumoniae Cp1015

78.912

98

0.773
  vicK Streptococcus mutans UA159

71.253

90.444

0.644