Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   RIN70_RS07280 Genome accession   NZ_CP134147
Coordinates   1438194..1439003 (-) Length   269 a.a.
NCBI ID   WP_049475139.1    Uniprot ID   A0A6L6LBR7
Organism   Streptococcus parasanguinis strain 30.8.10     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1433194..1444003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIN70_RS07250 (RIN70_07250) rnc 1433768..1434469 (-) 702 WP_049483702.1 ribonuclease III -
  RIN70_RS07255 (RIN70_07255) - 1434569..1434955 (-) 387 WP_151190856.1 YbaN family protein -
  RIN70_RS07260 (RIN70_07260) - 1435070..1435570 (-) 501 WP_313790505.1 hypothetical protein -
  RIN70_RS07265 (RIN70_07265) - 1435571..1436620 (-) 1050 WP_313790506.1 hypothetical protein -
  RIN70_RS07270 (RIN70_07270) - 1436716..1437375 (-) 660 WP_313790507.1 DUF443 family protein -
  RIN70_RS07275 (RIN70_07275) - 1437525..1438052 (-) 528 WP_313790508.1 hypothetical protein -
  RIN70_RS07280 (RIN70_07280) vicX 1438194..1439003 (-) 810 WP_049475139.1 MBL fold metallo-hydrolase Regulator
  RIN70_RS07285 (RIN70_07285) micB 1439011..1440363 (-) 1353 WP_049497363.1 cell wall metabolism sensor histidine kinase VicK Regulator
  RIN70_RS07290 (RIN70_07290) micA 1440356..1441057 (-) 702 WP_003008151.1 response regulator YycF Regulator
  RIN70_RS07295 (RIN70_07295) - 1441942..1442991 (+) 1050 WP_195623466.1 DUF389 domain-containing protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29722.70 Da        Isoelectric Point: 5.9511

>NTDB_id=878877 RIN70_RS07280 WP_049475139.1 1438194..1439003(-) (vicX) [Streptococcus parasanguinis strain 30.8.10]
MTEEGFKYSILASGSSGNSFYLETPKKKLLIDAGLSGKKITGLLAEIDRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEATWKAMEGTKYLGKVDDAQKHIFEMGKTKTFGDIDIESFGVSHDAAAPQFYRLMKDGKSFVMLTDTGYVSDRLAG
IVADADGYLIESNHDVEILRAGSYAWRLKQRILSDLGHLSNEDGADAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMEN
QLARADLAVGHDFEVLDTSPDTATPLTKI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=878877 RIN70_RS07280 WP_049475139.1 1438194..1439003(-) (vicX) [Streptococcus parasanguinis strain 30.8.10]
ATGACAGAAGAGGGATTTAAGTATAGTATTTTAGCTTCAGGTTCTAGTGGGAATTCTTTCTACCTTGAGACGCCAAAGAA
AAAACTGCTTATTGATGCAGGGCTATCAGGGAAAAAGATTACGGGACTATTGGCTGAAATTGATCGCAAACCAGAAGACT
TAGATGCCATTTTGATTACGCACGAACACTCAGACCATATCCATGGTGTGGGTGTTTTAGCGCGGAAATATGGCATGGAT
CTATATGCTAATGAAGCAACTTGGAAGGCTATGGAAGGCACCAAGTATCTAGGGAAAGTTGATGATGCTCAAAAGCACAT
CTTTGAAATGGGGAAGACCAAGACATTTGGCGATATCGATATCGAAAGTTTTGGGGTCAGTCACGATGCTGCAGCCCCTC
AATTCTATCGCTTGATGAAGGATGGCAAGAGCTTCGTCATGCTGACGGATACGGGCTATGTGAGCGATCGCTTGGCAGGT
ATCGTCGCGGATGCGGATGGCTATCTGATTGAGTCCAACCATGATGTAGAGATCCTTCGAGCAGGTTCTTACGCTTGGCG
CTTAAAGCAGCGGATCTTGTCAGACCTAGGCCACCTTTCTAACGAAGACGGTGCGGATGCCATGATCCGAACCTTGGGAA
ATCGCACCAAGAAGATTTATCTGGGACATTTGTCAAAAGAGAACAATATCAAAGAATTGGCCCATATGACTATGGAGAAT
CAACTGGCTCGAGCAGATCTAGCTGTTGGCCATGATTTTGAGGTGCTAGATACCTCGCCAGATACCGCGACCCCTTTGAC
GAAGATATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L6LBR7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

78.439

100

0.784