Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/celB   Type   Machinery gene
Locus tag   RIN70_RS03760 Genome accession   NZ_CP134147
Coordinates   719897..722143 (+) Length   748 a.a.
NCBI ID   WP_257738577.1    Uniprot ID   -
Organism   Streptococcus parasanguinis strain 30.8.10     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 714897..727143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIN70_RS03740 (RIN70_03740) - 714939..715685 (-) 747 WP_021152863.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  RIN70_RS03745 (RIN70_03745) - 715920..718259 (-) 2340 WP_257738576.1 cation-translocating P-type ATPase -
  RIN70_RS03750 (RIN70_03750) - 718435..719181 (+) 747 WP_003006324.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  RIN70_RS03755 (RIN70_03755) comEA/celA/cilE 719248..719916 (+) 669 WP_150905697.1 helix-hairpin-helix domain-containing protein Machinery gene
  RIN70_RS03760 (RIN70_03760) comEC/celB 719897..722143 (+) 2247 WP_257738577.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RIN70_RS03765 (RIN70_03765) - 722219..722821 (+) 603 WP_003006331.1 DUF805 domain-containing protein -
  RIN70_RS03770 (RIN70_03770) holA 722845..723879 (+) 1035 WP_049497253.1 DNA polymerase III subunit delta -
  RIN70_RS03775 (RIN70_03775) sodA 723968..724573 (+) 606 WP_003006336.1 superoxide dismutase SodA -
  RIN70_RS03780 (RIN70_03780) - 724784..726256 (+) 1473 WP_070589468.1 helicase HerA-like domain-containing protein -

Sequence

Protein


Download         Length: 748 a.a.        Molecular weight: 85701.19 Da        Isoelectric Point: 9.3102

>NTDB_id=878866 RIN70_RS03760 WP_257738577.1 719897..722143(+) (comEC/celB) [Streptococcus parasanguinis strain 30.8.10]
MLSRWIKDLPFSLVHLAFVLLWLYFSIYQPSWLSISGLVVVGVLAVHHYKGERSSLLGLALATLCFAAFFVFQRLQDHPV
QAESQPPSHLRLIPDTIKINGDALSFRAKNQGRTYQVFYTLKSEKEKQQWQSQTRLMELTYKGVIEEPEGQRNFRGFDYR
SYLETQGIHYQIKIEAIQSAVPIQTWNVFDWLSQWRRQAIVWSKEHFPQPMNQYMTGLLFGYLDTDFEEMDQLYTSLGII
HLFALSGMQVGFFINGIRKALLRLGILQETVDIWMLPISLVYAGLTGFSVSVVRSLLQKILSQKGIRGMENMAMTLMILM
VLMPKFLLTAGGVLSCAYAFILTLVDTSSYSGLKKLLVESFWISLGILPLLTYYFSVFQPWSLPLTFLFSFLFDLVLLPG
LTVLFILSILKPLTIFNSFFLLIEECIRWISKLTSLPLVFGQPTGPALIALFLLLGILYDLRKQKKRRFLLIGMILLIFC
WTKHPLENEITMVDIGQGDSIFLRDWKGRTILIDVGGRVTFKSGEKWQERSQSANADQTLIPYLKSRGVGKLDALVLTHT
DQDHMGDMVEVAKQIPVKKVYVSPGSLTNSQFREKLKQLHSPIKVVQRGDQLPIFDHHLEVLSPDEVGDGKNDDSIVLYG
QFFQKRFLFTGDLEEAGEKKLLKNDPQLQVDVLKVGHHGSKGSSSDVFLDQLHPQLALISVGKKNRYQHPHKELLDRLEE
RSISYLRTDERGAIRLIGWDHWRVETVR

Nucleotide


Download         Length: 2247 bp        

>NTDB_id=878866 RIN70_RS03760 WP_257738577.1 719897..722143(+) (comEC/celB) [Streptococcus parasanguinis strain 30.8.10]
ATGCTTTCACGGTGGATTAAAGACCTTCCTTTTTCGCTTGTCCATCTCGCCTTTGTGCTCCTATGGCTGTATTTTAGTAT
CTATCAACCATCTTGGCTTTCGATCAGCGGTCTAGTAGTAGTGGGAGTTTTAGCGGTTCATCACTATAAAGGGGAGCGCT
CAAGTTTGCTAGGGCTTGCTTTAGCAACCCTTTGTTTTGCGGCCTTCTTTGTCTTTCAGCGACTACAGGATCATCCAGTA
CAAGCAGAAAGTCAGCCCCCATCCCACTTACGCCTGATTCCAGATACCATCAAGATCAATGGGGACGCCCTGTCTTTTCG
TGCTAAAAATCAGGGAAGGACCTACCAAGTCTTCTACACTTTAAAATCAGAAAAAGAAAAACAGCAGTGGCAAAGTCAAA
CCCGCTTGATGGAGTTGACATATAAAGGTGTTATAGAAGAACCAGAAGGGCAACGAAATTTTAGAGGATTTGACTACCGG
TCTTATTTGGAAACACAGGGAATTCACTATCAAATAAAAATTGAAGCGATCCAATCTGCGGTTCCCATCCAAACGTGGAA
TGTTTTTGACTGGCTATCTCAATGGAGGCGCCAAGCCATTGTTTGGAGCAAGGAGCACTTTCCACAGCCGATGAACCAGT
ATATGACCGGCCTTCTTTTTGGTTATTTAGATACGGATTTTGAAGAGATGGATCAGCTTTACACGAGTTTGGGCATCATC
CATTTGTTCGCCTTATCTGGGATGCAGGTCGGCTTTTTCATCAATGGGATCCGGAAAGCTCTCTTACGTCTAGGAATCTT
GCAAGAGACAGTCGATATCTGGATGCTTCCAATTTCTTTGGTCTATGCTGGCTTGACAGGTTTTTCAGTTTCAGTGGTTC
GTAGTCTCTTGCAGAAGATCCTCTCTCAAAAGGGGATCCGAGGGATGGAGAATATGGCGATGACCTTGATGATCTTAATG
GTGCTCATGCCCAAGTTTCTTCTGACAGCTGGAGGGGTCTTGAGTTGTGCCTACGCCTTTATTTTGACCTTGGTAGATAC
CAGTTCTTATTCAGGACTTAAAAAGCTACTAGTGGAAAGTTTCTGGATTAGCCTGGGAATTTTGCCCCTTTTGACCTATT
ACTTTAGTGTCTTTCAACCGTGGTCACTCCCTTTAACCTTCCTCTTTTCTTTCTTATTTGACCTTGTCCTTCTTCCAGGT
TTAACGGTGCTATTTATCTTATCGATTCTAAAGCCCCTTACAATTTTTAACAGTTTCTTTCTTCTCATAGAGGAGTGTAT
TCGTTGGATTTCAAAGCTCACGTCGCTACCTTTGGTATTTGGTCAGCCGACGGGACCAGCTCTGATTGCTCTCTTCCTTC
TTTTAGGAATCTTGTATGATCTTCGAAAGCAAAAAAAACGTCGTTTCCTGTTAATAGGCATGATTCTACTCATCTTTTGT
TGGACCAAGCATCCTTTAGAAAATGAGATTACCATGGTGGATATTGGTCAAGGAGACAGTATCTTTTTACGCGATTGGAA
AGGAAGAACCATATTGATTGATGTCGGAGGACGTGTCACTTTTAAAAGTGGAGAAAAGTGGCAAGAGCGCAGTCAATCTG
CCAATGCGGATCAAACCTTGATTCCCTATCTCAAGAGTCGTGGTGTTGGAAAACTCGATGCTTTGGTCTTGACTCATACA
GACCAGGACCATATGGGCGATATGGTGGAGGTTGCCAAACAAATCCCAGTTAAAAAAGTGTATGTCAGTCCAGGTAGTCT
AACTAATTCTCAATTTCGAGAGAAATTGAAACAGCTTCATAGTCCGATTAAAGTAGTCCAGAGAGGAGATCAACTACCTA
TTTTTGATCATCATCTAGAAGTCTTATCCCCTGATGAAGTGGGGGATGGTAAAAATGATGATTCAATTGTCCTCTATGGG
CAGTTCTTTCAGAAACGATTTTTGTTCACGGGTGATTTGGAAGAAGCTGGAGAGAAAAAACTATTGAAAAACGATCCACA
ATTACAAGTAGATGTCTTGAAAGTAGGCCACCACGGTTCTAAAGGTTCCTCTAGTGATGTGTTTTTAGATCAGTTACATC
CTCAGTTGGCCTTGATCTCTGTTGGAAAGAAAAATCGCTACCAACATCCCCATAAAGAATTGCTCGATCGTCTAGAGGAA
CGCTCTATTTCTTACCTTCGTACCGATGAAAGGGGAGCGATTCGCTTGATTGGGTGGGACCATTGGAGGGTAGAAACGGT
CCGCTAG

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(30-178)

Competence protein (Competence)

(218-463)

Metallo-beta-lactamase superfamily (Lactamase_B)

(496-700)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/celB Streptococcus mitis SK321

53.538

100

0.536
  comEC/celB Streptococcus mitis NCTC 12261

52.807

100

0.528
  comEC/celB Streptococcus pneumoniae TIGR4

52.603

100

0.527
  comEC/celB Streptococcus pneumoniae Rx1

52.336

100

0.524
  comEC/celB Streptococcus pneumoniae D39

52.336

100

0.524
  comEC/celB Streptococcus pneumoniae R6

52.336

100

0.524
  comEC Lactococcus lactis subsp. cremoris KW2

46.996

100

0.471