Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   RIN70_RS03130 Genome accession   NZ_CP134147
Coordinates   594638..595297 (-) Length   219 a.a.
NCBI ID   WP_195623300.1    Uniprot ID   -
Organism   Streptococcus parasanguinis strain 30.8.10     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 589638..600297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIN70_RS03110 (RIN70_03110) - 590834..591409 (+) 576 WP_049474406.1 YutD-like domain-containing protein -
  RIN70_RS03115 (RIN70_03115) rlmN 591416..592504 (+) 1089 WP_003005918.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  RIN70_RS03120 (RIN70_03120) - 592491..593018 (+) 528 WP_272144714.1 VanZ family protein -
  RIN70_RS03125 (RIN70_03125) trpB 593443..594630 (+) 1188 WP_272144650.1 tryptophan synthase subunit beta -
  RIN70_RS03130 (RIN70_03130) cclA/cilC 594638..595297 (-) 660 WP_195623300.1 A24 family peptidase Machinery gene
  RIN70_RS03135 (RIN70_03135) - 595385..595603 (+) 219 WP_003017930.1 YqgQ family protein -
  RIN70_RS03140 (RIN70_03140) - 595603..595986 (+) 384 WP_045759160.1 rhodanese-like domain-containing protein -
  RIN70_RS03145 (RIN70_03145) - 596030..596755 (-) 726 WP_037607786.1 16S rRNA pseudouridine(516) synthase -
  RIN70_RS03150 (RIN70_03150) typA 596934..598781 (+) 1848 WP_003005937.1 translational GTPase TypA -
  RIN70_RS03155 (RIN70_03155) - 598805..599053 (+) 249 WP_004219693.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24997.11 Da        Isoelectric Point: 7.7882

>NTDB_id=878860 RIN70_RS03130 WP_195623300.1 594638..595297(-) (cclA/cilC) [Streptococcus parasanguinis strain 30.8.10]
MINFYFFTIGTCIASFLGLVVDRFPNQSILAPRSHCDHCQHVLGVWDLIPIISQLLHRFRCHYCHQPYPFWYCLFEVWSG
LLFLACANGFLSLPHLLTLLGAAVLAIYDLRFMEYPLVIWCCLHALVLFLSGSNLLMLVFLLLAIGAHFFFIGMGAGDFL
LLATFSLSFSSTKILFLIQIASLLGILVFALKKERDRIPFVPCLFLSYHALLLYTIFCR

Nucleotide


Download         Length: 660 bp        

>NTDB_id=878860 RIN70_RS03130 WP_195623300.1 594638..595297(-) (cclA/cilC) [Streptococcus parasanguinis strain 30.8.10]
ATGATCAACTTTTATTTTTTTACCATCGGTACTTGTATCGCCTCTTTTTTGGGGCTCGTTGTCGACCGTTTCCCAAACCA
ATCTATTCTCGCTCCTCGCAGTCATTGTGATCACTGCCAGCACGTCCTTGGCGTTTGGGATCTCATCCCCATTATCTCGC
AACTACTCCATCGTTTTCGCTGCCACTATTGTCATCAGCCCTACCCATTTTGGTACTGCCTTTTTGAGGTCTGGAGTGGC
CTGCTCTTTTTGGCCTGTGCCAATGGTTTTCTTTCTCTGCCTCACCTTCTAACACTACTGGGAGCAGCCGTTTTAGCCAT
CTATGACCTTCGCTTTATGGAATACCCCTTGGTCATCTGGTGCTGTCTTCATGCCCTGGTCCTCTTTTTATCCGGTAGTA
ATCTCCTCATGCTGGTCTTTTTACTCCTTGCGATCGGAGCTCATTTTTTCTTTATCGGAATGGGAGCAGGAGATTTTCTC
TTACTCGCCACCTTTTCGCTAAGCTTTTCTTCCACCAAGATTCTCTTTCTCATTCAGATCGCATCCCTCTTAGGGATTCT
CGTCTTTGCTCTCAAAAAAGAAAGAGACCGGATTCCCTTTGTTCCCTGTCTCTTTCTCAGTTATCACGCTTTACTGCTTT
ATACGATATTTTGCAGATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

54.589

94.521

0.516
  cclA/cilC Streptococcus mitis NCTC 12261

54.106

94.521

0.511
  cclA/cilC Streptococcus pneumoniae TIGR4

53.623

94.521

0.507
  cclA/cilC Streptococcus pneumoniae Rx1

53.623

94.521

0.507
  cclA/cilC Streptococcus pneumoniae D39

53.623

94.521

0.507
  cclA/cilC Streptococcus pneumoniae R6

53.623

94.521

0.507