Detailed information NTG0878739

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: RI108_RS03970
• Genome accession: NZ_CP134081
• Coordinates: 866181..867527 (-)
• Length: 448 a.a.
• NCBI ID: WP_310792377.1
• Uniprot ID: A0AAJ6M1R8
• Organism: Pseudomonas coleopterorum strain DJ13
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 861181..872527

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RI108_RS03955 (RI108_03955)	-	861497..864592 (+)	3096	WP_310792375.1	PilC/PilY family type IV pilus protein	-
RI108_RS03960 (RI108_03960)	-	864601..864996 (+)	396	WP_310793089.1	type IV pilin protein	-
RI108_RS03965 (RI108_03965)	thiO	865017..866117 (+)	1101	WP_310792376.1	glycine oxidase ThiO	-
RI108_RS03970 (RI108_03970)	pilR	866181..867527 (-)	1347	WP_310792377.1	sigma-54 dependent transcriptional regulator	Regulator
RI108_RS03975 (RI108_03975)	pilS	867530..869125 (-)	1596	WP_375143178.1	PAS domain-containing sensor histidine kinase	Regulator
RI108_RS03980 (RI108_03980)	-	869115..869348 (-)	234	WP_049860967.1	PP0621 family protein	-
RI108_RS03985 (RI108_03985)	-	869699..870721 (-)	1023	WP_049860968.1	outer membrane protein assembly factor BamD	-
RI108_RS03990 (RI108_03990)	rluD	870872..871834 (+)	963	WP_049860969.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 49808.22 Da
• Isoelectric Point: 5.8546

>NTDB_id=878739 RI108_RS03970 WP_310792377.1 866181..867527(-) (pilR) [Pseudomonas coleopterorum strain DJ13]
MSARQKILIVDDEPDIRELLEITLGRMKLETRSARDVAEAREWLGRESFDLCLTDMRLPDGTGLELVQFIQQRYSHVPVA
MITAFGSLDTAINALKAGAFDFLTKPVDLPRLRELVSAALRMPAPAPAGKEPSIDQRLLGESPPMLGLRKQIGRLARSQA
PVYISGESGSGKELVARLIHEQGPRADRPFIPVNCGAIPAELMESEFFGHRKGSFTGATEDKPGLFQAAHGGTLFLDEVA
DLPLTMQVKLLRAIQEKAVRAVGGQTENVVDVRILSATHKDLAAEVAAQRFRQDLYYRLNVIELRVPCLRERREDIPLLA
TSVLARLAQGSGLPAAQLTPAALETLKGYRFPGNVRELENMLERAYTLCEDDRIEASDLRLSETASTVETGEPSLAQIDN
LEDYLESVERKLILQALEETRWNRTAAAQRLNMSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=878739 RI108_RS03970 WP_310792377.1 866181..867527(-) (pilR) [Pseudomonas coleopterorum strain DJ13]
ATGAGCGCCAGGCAAAAAATTCTGATCGTGGACGACGAGCCGGACATTCGTGAACTGCTGGAGATCACCCTTGGCCGCAT
GAAGCTGGAAACCCGCAGTGCGCGCGATGTCGCCGAAGCCCGCGAATGGCTGGGCCGCGAATCGTTCGACCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGTACCGGTCTTGAGCTGGTGCAATTCATCCAGCAGCGCTACTCCCACGTGCCGGTGGCC
ATGATCACTGCGTTCGGCAGCCTGGATACGGCGATCAACGCACTCAAGGCCGGCGCCTTCGATTTCCTCACCAAACCGGT
CGATCTGCCGCGCCTGCGCGAGTTGGTCAGTGCCGCGCTGCGCATGCCAGCGCCCGCTCCTGCCGGCAAGGAACCGAGCA
TCGACCAGCGCCTGCTCGGCGAGTCGCCTCCCATGCTCGGCCTGCGCAAGCAGATCGGCCGTCTGGCGCGCAGCCAGGCG
CCCGTCTACATCAGCGGCGAGTCAGGCAGCGGCAAGGAACTGGTCGCCCGGCTGATCCATGAGCAAGGCCCGCGCGCCGA
TCGACCGTTCATCCCAGTCAACTGCGGGGCCATCCCTGCCGAACTGATGGAGAGCGAGTTCTTCGGCCATCGCAAGGGCA
GCTTCACCGGCGCCACCGAAGACAAGCCGGGACTGTTTCAGGCCGCTCACGGTGGCACACTCTTTCTCGACGAGGTGGCC
GACCTGCCGCTGACCATGCAGGTGAAGTTGCTGCGTGCCATTCAGGAGAAGGCCGTGCGCGCGGTGGGTGGGCAGACCGA
AAACGTGGTCGATGTGCGTATTCTCAGCGCGACCCATAAAGACCTGGCAGCCGAAGTGGCGGCCCAGCGTTTTCGTCAGG
ATCTGTACTACCGCCTCAACGTGATCGAGCTTCGCGTGCCGTGCCTGCGCGAGCGTCGTGAGGACATTCCGCTGCTGGCC
ACCAGCGTGCTGGCGCGCCTGGCGCAAGGCAGCGGCCTGCCTGCCGCACAGTTGACGCCTGCCGCTTTGGAAACTCTCAA
GGGCTACCGCTTTCCCGGCAATGTGCGGGAGCTGGAGAACATGCTGGAGCGGGCCTACACCTTGTGTGAGGACGACCGCA
TCGAAGCGAGCGACCTGCGCCTGAGCGAAACGGCGTCCACCGTGGAGACCGGCGAGCCCAGCCTGGCCCAGATCGACAAC
CTGGAAGATTACCTGGAAAGCGTGGAGCGCAAGCTCATCCTGCAAGCCCTGGAAGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGCTGAACATGTCGTTCCGTTCGATGCGCTATCGCCTGAAGAAGCTCGGGCTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.821	99.554	0.795
pilR	Acinetobacter baumannii strain A118	49.455	100	0.507
luxO	Vibrio cholerae strain A1552	37.246	98.884	0.368