Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   RI108_RS03975 Genome accession   NZ_CP134081
Coordinates   867530..869125 (-) Length   531 a.a.
NCBI ID   WP_375143178.1    Uniprot ID   -
Organism   Pseudomonas coleopterorum strain DJ13     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 862530..874125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI108_RS03960 (RI108_03960) - 864601..864996 (+) 396 WP_310793089.1 type IV pilin protein -
  RI108_RS03965 (RI108_03965) thiO 865017..866117 (+) 1101 WP_310792376.1 glycine oxidase ThiO -
  RI108_RS03970 (RI108_03970) pilR 866181..867527 (-) 1347 WP_310792377.1 sigma-54 dependent transcriptional regulator Regulator
  RI108_RS03975 (RI108_03975) pilS 867530..869125 (-) 1596 WP_375143178.1 PAS domain-containing sensor histidine kinase Regulator
  RI108_RS03980 (RI108_03980) - 869115..869348 (-) 234 WP_049860967.1 PP0621 family protein -
  RI108_RS03985 (RI108_03985) - 869699..870721 (-) 1023 WP_049860968.1 outer membrane protein assembly factor BamD -
  RI108_RS03990 (RI108_03990) rluD 870872..871834 (+) 963 WP_049860969.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RI108_RS03995 (RI108_03995) pgeF 871831..872568 (+) 738 WP_310792378.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 531 a.a.        Molecular weight: 58495.63 Da        Isoelectric Point: 7.5087

>NTDB_id=878740 RI108_RS03975 WP_375143178.1 867530..869125(-) (pilS) [Pseudomonas coleopterorum strain DJ13]
MPAEAQFLGGAQAQRMLRLYHLYRLTIGLSLVLLISSNMDNRLLEVADGELFRAGSWLYLILNILVVVLMGNPRRVLPVF
SLATADVIMLAGLFYAGGGTPSGIGNLMIASVAMGNLLLRGRLGLLIAALATIGIIYLTFYLSISRPAAANDYLQASTLG
VLCFAVWFVVQGLSRLLSTSENLAEQRASDVTSLEALNSLILQRMRTGILVLDTELRVQLANQGALALFGRMTLNGELIA
DHSPDLIERLLQWQTNPALRVKSLKLSPTGASIQASFIALRRGGEQQQTLVFLEDLSQIAQQAQQLKLAALGRLTASIAH
EIRNPLGAISHAGQLLQESEDLPAADRRLTQIIQDHCKRMNLIIENVLQLSRRRPSAPHPLDLKAWLENFVSEFRTTARP
GQQLHMYVSDGTLETRMDANQLTQVLNNLVENGLRYSAQQQGRAQVWLNLFVEPTNGLPILEVLDDGPGFAADQLQHMFE
PFFTTESNGTGLGLYISRELCESNQAHLDYRAREKGGSCMRITFAHPRKQG

Nucleotide


Download         Length: 1596 bp        

>NTDB_id=878740 RI108_RS03975 WP_375143178.1 867530..869125(-) (pilS) [Pseudomonas coleopterorum strain DJ13]
GTGCCCGCTGAAGCGCAGTTTCTCGGCGGCGCCCAGGCGCAGCGGATGCTGCGCCTGTACCACCTCTACCGCTTGACCAT
TGGTCTGTCCCTGGTCCTGCTTATTTCCAGCAACATGGACAACCGCCTGCTGGAAGTCGCCGATGGCGAACTGTTCCGCG
CCGGCAGCTGGCTCTACCTCATTCTCAATATCCTGGTCGTGGTGCTGATGGGCAACCCGCGCCGGGTGCTGCCGGTATTC
AGCCTGGCCACCGCCGACGTGATCATGCTCGCCGGCCTGTTCTACGCCGGTGGCGGCACGCCCAGCGGCATCGGCAACCT
GATGATCGCCTCCGTGGCCATGGGCAACCTGTTGCTGCGCGGTCGCCTCGGCCTGTTGATCGCCGCACTCGCCACCATCG
GCATCATCTACCTGACGTTCTATCTGAGCATCTCCCGACCGGCCGCCGCCAACGACTACCTGCAGGCGAGTACCTTGGGT
GTGCTGTGCTTCGCCGTGTGGTTCGTGGTTCAGGGGCTGAGCCGACTGCTGAGCACCAGCGAGAACCTGGCCGAACAACG
CGCCAGTGATGTCACCAGCCTGGAGGCCTTGAATTCGCTGATCCTGCAGCGCATGCGCACCGGCATTCTGGTGCTGGACA
CCGAACTGCGCGTGCAACTGGCCAACCAGGGCGCCCTGGCCCTGTTCGGGCGCATGACGCTCAATGGCGAACTGATCGCC
GATCACTCTCCCGACTTGATCGAGCGTCTGTTGCAGTGGCAGACCAATCCAGCCTTGCGGGTCAAGAGCTTGAAGCTGTC
GCCTACCGGTGCGTCGATCCAGGCCAGCTTCATTGCCCTGCGCCGCGGTGGCGAGCAGCAACAGACGCTGGTGTTTCTCG
AGGACCTGTCGCAGATCGCGCAGCAGGCACAACAGCTCAAGCTGGCTGCCCTGGGTCGTCTCACGGCCAGCATCGCCCAC
GAGATCCGCAATCCGCTGGGGGCCATCAGCCATGCAGGCCAGTTGCTGCAGGAGTCCGAAGACCTGCCCGCCGCCGACCG
GCGTCTGACTCAGATCATTCAGGATCACTGCAAGCGCATGAACCTGATCATCGAAAACGTACTGCAGCTGTCGCGTCGCC
GCCCCAGCGCGCCGCACCCACTGGACCTCAAAGCCTGGCTGGAAAACTTCGTCAGCGAATTCCGCACCACCGCCCGTCCA
GGCCAACAGTTGCATATGTATGTCAGCGACGGCACCCTGGAAACGCGCATGGATGCCAACCAGTTGACCCAGGTGCTGAA
CAACCTGGTGGAAAACGGCCTGCGCTACAGCGCCCAGCAACAGGGCCGCGCGCAGGTCTGGCTGAATCTGTTCGTGGAGC
CGACCAACGGTTTGCCGATCCTCGAGGTGCTGGACGACGGCCCGGGCTTTGCCGCCGATCAGCTGCAGCACATGTTCGAG
CCTTTCTTCACCACCGAAAGCAACGGCACCGGGCTGGGCCTGTATATTTCCCGCGAGCTGTGCGAAAGCAATCAGGCCCA
CCTAGACTACAGGGCACGTGAAAAAGGCGGGAGCTGCATGCGTATCACCTTCGCCCACCCGCGCAAACAGGGATGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(418-524)

His Kinase A (phospho-acceptor) domain (HisKA)

(310-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.437

99.623

0.612