Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RG931_RS02920 Genome accession   NZ_CP134066
Coordinates   595456..596025 (+) Length   189 a.a.
NCBI ID   WP_003426596.1    Uniprot ID   A0A0K8M6E3
Organism   Pseudomonas syringae pv. actinidiae strain QSY6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 590456..601025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG931_RS02905 (RG931_000571) bfr 590530..590994 (+) 465 WP_004397024.1 bacterioferritin -
  RG931_RS02910 (RG931_000572) uvrA 591088..593922 (-) 2835 WP_005614297.1 excinuclease ABC subunit UvrA -
  RG931_RS02915 (RG931_000573) - 594052..595446 (+) 1395 WP_004397022.1 MFS transporter -
  RG931_RS02920 (RG931_000574) ssb 595456..596025 (+) 570 WP_003426596.1 single-stranded DNA-binding protein Machinery gene
  RG931_RS02925 (RG931_000575) - 596249..596548 (-) 300 WP_003379193.1 hypothetical protein -
  RG931_RS02930 (RG931_000576) - 596671..597414 (-) 744 WP_003379192.1 inositol monophosphatase family protein -
  RG931_RS02935 (RG931_000577) - 597411..598172 (-) 762 WP_003379189.1 glycerophosphoryl diester phosphodiesterase -
  RG931_RS02940 (RG931_000578) ugpC 598179..599285 (-) 1107 WP_003379187.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  RG931_RS02945 (RG931_000579) - 599282..600175 (-) 894 WP_003379184.1 ABC transporter permease subunit -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20974.10 Da        Isoelectric Point: 5.9404

>NTDB_id=878569 RG931_RS02920 WP_003426596.1 595456..596025(+) (ssb) [Pseudomonas syringae pv. actinidiae strain QSY6]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPP
QQRDSRPAPQQQAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=878569 RG931_RS02920 WP_003426596.1 595456..596025(+) (ssb) [Pseudomonas syringae pv. actinidiae strain QSY6]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAATGGACTGACAAGCAGAGCGGCCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTTTCGATGTTCGGCAAGGTTGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACGCTCAACAAGGTCAGGGCGGTGGCGGCAACTACAACCAGTCTGCAC
CTCGTCCACAGCAGTCGCGCCCACAGCAATCGGCGCCGCAGCAATCTGCCCCTCAGCAGAACTACAACCAGCAGCCGCCA
CAACAGCGCGATTCGCGCCCAGCGCCGCAACAACAAGCGCCGCAGCCTGCTGCTGACTTTGACAGCTTTGATGACGATAT
TCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K8M6E3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.208

100

0.561
  ssb Glaesserella parasuis strain SC1401

47.368

100

0.476
  ssb Neisseria meningitidis MC58

44.681

99.471

0.444
  ssb Neisseria gonorrhoeae MS11

44.681

99.471

0.444