Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RE429_RS14395 Genome accession   NZ_CP134063
Coordinates   3031515..3032030 (-) Length   171 a.a.
NCBI ID   WP_414471425.1    Uniprot ID   -
Organism   Microvirga sp. M2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3026515..3037030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE429_RS14365 (RE429_14320) - 3027183..3028037 (-) 855 WP_414471419.1 hypothetical protein -
  RE429_RS14370 (RE429_14325) - 3028107..3028745 (+) 639 WP_414471420.1 MarC family protein -
  RE429_RS14375 (RE429_14330) - 3028778..3028969 (+) 192 WP_414471421.1 hypothetical protein -
  RE429_RS14380 (RE429_14335) - 3028989..3029516 (-) 528 WP_414471422.1 RNA pyrophosphohydrolase -
  RE429_RS14385 (RE429_14340) - 3029410..3029844 (-) 435 WP_414471423.1 GNAT family N-acetyltransferase -
  RE429_RS14390 (RE429_14345) - 3030024..3031136 (-) 1113 WP_414471424.1 M20 family metallopeptidase -
  RE429_RS14395 (RE429_14350) ssb 3031515..3032030 (-) 516 WP_414471425.1 single-stranded DNA-binding protein Machinery gene
  RE429_RS14400 (RE429_14355) - 3032212..3036462 (-) 4251 WP_414471426.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19003.08 Da        Isoelectric Point: 6.0090

>NTDB_id=878564 RE429_RS14395 WP_414471425.1 3031515..3032030(-) (ssb) [Microvirga sp. M2]
MAGSVNKVILVGNLGRDPEVRRLNNGEPVVNLRIATSETWKDKATGERKEKTEWHSVVIFNENLGRVAEQYLKKGSKVYI
EGQLQTRKWTDQSGQEKYTTEVVLQRFRGEMTILDGRSGGGASSEYGDEEPGQISRGGDFGRSSPMERRPSPVPSGGGTP
RYNDLDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=878564 RE429_RS14395 WP_414471425.1 3031515..3032030(-) (ssb) [Microvirga sp. M2]
ATGGCAGGCAGCGTGAACAAGGTGATATTGGTGGGCAATCTGGGGCGGGATCCCGAGGTGCGCCGGCTGAACAACGGCGA
GCCGGTGGTCAACCTGCGCATTGCGACCTCGGAGACCTGGAAGGACAAGGCCACGGGCGAGCGCAAGGAAAAGACCGAGT
GGCACTCGGTGGTGATCTTCAACGAGAACCTGGGCCGGGTGGCCGAGCAATATCTCAAGAAGGGCTCGAAGGTTTACATC
GAAGGGCAGCTCCAGACCCGCAAATGGACCGACCAGTCGGGCCAGGAGAAGTACACCACCGAGGTGGTGCTGCAGCGCTT
CCGCGGCGAGATGACGATCCTGGACGGGCGCTCGGGCGGCGGGGCGTCGTCGGAATACGGCGACGAGGAGCCGGGCCAGA
TCAGCCGCGGCGGCGATTTCGGCCGTTCCTCCCCCATGGAACGCCGGCCGTCTCCGGTTCCGAGCGGAGGCGGAACCCCG
CGCTACAACGACCTCGACGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.409

100

0.55
  ssb Glaesserella parasuis strain SC1401

44.792

100

0.503
  ssb Neisseria meningitidis MC58

43.407

100

0.462
  ssb Neisseria gonorrhoeae MS11

43.407

100

0.462