Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RG494_RS04195 Genome accession   NZ_CP134046
Coordinates   932114..932614 (+) Length   166 a.a.
NCBI ID   WP_005725039.1    Uniprot ID   A0A379BD60
Organism   Pasteurella multocida strain AKS2022-HT5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 927114..937614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG494_RS04180 rlmB 927657..928394 (+) 738 WP_005725044.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  RG494_RS04185 sodC 928480..929040 (-) 561 WP_241951160.1 superoxide dismutase [Cu-Zn] SodC -
  RG494_RS04190 uvrA 929111..931942 (-) 2832 WP_241951161.1 excinuclease ABC subunit UvrA -
  RG494_RS04195 ssb 932114..932614 (+) 501 WP_005725039.1 single-stranded DNA-binding protein Machinery gene
  RG494_RS04200 - 932727..933860 (-) 1134 WP_241951162.1 patatin-like phospholipase family protein -
  RG494_RS04205 folD 933988..934842 (-) 855 WP_241951163.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  RG494_RS04220 - 935485..935904 (+) 420 WP_241951164.1 DUF417 family protein -
  RG494_RS04225 lipA 935982..936944 (-) 963 WP_005719422.1 lipoyl synthase -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18657.68 Da        Isoelectric Point: 5.3353

>NTDB_id=878294 RG494_RS04195 WP_005725039.1 932114..932614(+) (ssb) [Pasteurella multocida strain AKS2022-HT5]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGGYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=878294 RG494_RS04195 WP_005725039.1 932114..932614(+) (ssb) [Pasteurella multocida strain AKS2022-HT5]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGGAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGCCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAAGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGATCGCTACACCACTGAAATTCAAGGCGACGTGTTACAGAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTACGCACCACAAACCGCTGCGCCACAATATAATGCCCCAACAG
GTGGCTACGGCGCACAACCTTCTCGTCCAGCGACAAAACCCGCCCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A379BD60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

69.231

100

0.759
  ssb Vibrio cholerae strain A1552

53.591

100

0.584
  ssb Neisseria meningitidis MC58

44.068

100

0.47
  ssb Neisseria gonorrhoeae MS11

44.068

100

0.47