Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   RDV49_RS09670 Genome accession   NZ_CP133988
Coordinates   2003512..2004171 (+) Length   219 a.a.
NCBI ID   WP_003005926.1    Uniprot ID   A0AAX4AX16
Organism   Streptococcus parasanguinis strain B-1756     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1998512..2009171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV49_RS09645 (RDV49_09645) - 1999756..2000004 (-) 249 WP_004219693.1 DUF3165 family protein -
  RDV49_RS09650 (RDV49_09650) typA 2000028..2001875 (-) 1848 WP_003005937.1 translational GTPase TypA -
  RDV49_RS09655 (RDV49_09655) - 2002054..2002779 (+) 726 WP_037607786.1 16S rRNA pseudouridine(516) synthase -
  RDV49_RS09660 (RDV49_09660) - 2002823..2003206 (-) 384 WP_003005932.1 rhodanese-like domain-containing protein -
  RDV49_RS09665 (RDV49_09665) - 2003206..2003424 (-) 219 WP_003017930.1 YqgQ family protein -
  RDV49_RS09670 (RDV49_09670) cclA/cilC 2003512..2004171 (+) 660 WP_003005926.1 A24 family peptidase Machinery gene
  RDV49_RS09675 (RDV49_09675) trpB 2004179..2005366 (-) 1188 WP_003005924.1 tryptophan synthase subunit beta -
  RDV49_RS09680 (RDV49_09680) - 2005791..2006318 (-) 528 WP_003005921.1 VanZ family protein -
  RDV49_RS09685 (RDV49_09685) rlmN 2006305..2007393 (-) 1089 WP_003005918.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  RDV49_RS09690 (RDV49_09690) - 2007400..2007975 (-) 576 WP_003005915.1 YutD-like domain-containing protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 25129.29 Da        Isoelectric Point: 7.7675

>NTDB_id=878183 RDV49_RS09670 WP_003005926.1 2003512..2004171(+) (cclA/cilC) [Streptococcus parasanguinis strain B-1756]
MINFYFFTIGTCIASFLGLVVDRFPNQFILAPRSHCDHCQHILGVWDLIPIISQLLHRFRCRYCHQPYPFWYCLFEVWSG
LLFLACANGYLSLPQLLTLLGAAVLAIYDLRFMEYPLVIWCCLHALVLFLSGSNLLMLVFLLLAIGAHFFFIGMGAGDFL
LLATFSLSFSSTQILILIQIASILGILFFALKKERDRIPFVPCLFLSYHALLLYTMFCR

Nucleotide


Download         Length: 660 bp        

>NTDB_id=878183 RDV49_RS09670 WP_003005926.1 2003512..2004171(+) (cclA/cilC) [Streptococcus parasanguinis strain B-1756]
ATGATCAACTTTTATTTTTTTACCATCGGTACTTGTATCGCCTCTTTTTTGGGACTAGTTGTCGACCGTTTCCCAAACCA
ATTCATTCTCGCTCCTCGCAGTCATTGTGATCACTGCCAGCACATCCTTGGAGTTTGGGACCTCATCCCCATTATCTCGC
AACTACTGCATCGCTTTCGCTGTCGCTATTGTCATCAGCCCTACCCATTTTGGTACTGCCTTTTTGAGGTCTGGAGTGGC
CTGCTCTTTTTAGCCTGCGCCAATGGTTACCTTTCCCTGCCTCAACTTCTAACACTACTGGGAGCTGCCGTTTTAGCCAT
CTATGACCTTCGCTTTATGGAATACCCCTTGGTCATCTGGTGCTGTCTCCATGCCCTAGTCCTCTTTTTATCCGGTAGTA
ATCTCCTCATGCTGGTCTTTTTACTCCTTGCAATCGGAGCTCACTTTTTCTTTATCGGAATGGGAGCAGGAGATTTTCTC
TTACTAGCTACCTTTTCGCTAAGCTTTTCTTCTACCCAGATCCTCATTCTCATTCAGATCGCATCCATCTTAGGCATTCT
CTTCTTTGCTCTCAAAAAAGAAAGAGACCGGATTCCCTTTGTTCCCTGTCTCTTTCTCAGTTATCACGCTTTACTGCTTT
ATACGATGTTTTGCAGATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

55.072

94.521

0.521
  cclA/cilC Streptococcus mitis NCTC 12261

55.072

94.521

0.521
  cclA/cilC Streptococcus pneumoniae TIGR4

54.589

94.521

0.516
  cclA/cilC Streptococcus pneumoniae Rx1

54.589

94.521

0.516
  cclA/cilC Streptococcus pneumoniae D39

54.589

94.521

0.516
  cclA/cilC Streptococcus pneumoniae R6

54.589

94.521

0.516