Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   QQE96_RS07680 Genome accession   NZ_CP133987
Coordinates   514521..515123 (+) Length   200 a.a.
NCBI ID   WP_168520833.1    Uniprot ID   -
Organism   Vibrio aestuarianus subsp. francensis strain LC_Sco     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 509521..520123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQE96_RS07665 (QQE96_07745) oxyR 509908..510798 (+) 891 WP_168520826.1 DNA-binding transcriptional regulator OxyR -
  QQE96_RS07670 (QQE96_07750) - 510858..513377 (-) 2520 WP_168520829.1 penicillin-binding protein 1A -
  QQE96_RS07675 (QQE96_07755) pilM 513521..514537 (+) 1017 WP_168520831.1 type IV pilus assembly protein PilM Machinery gene
  QQE96_RS07680 (QQE96_07760) pilN 514521..515123 (+) 603 WP_168520833.1 PilN domain-containing protein Machinery gene
  QQE96_RS07685 (QQE96_07765) pilO 515116..515709 (+) 594 WP_168520835.1 type 4a pilus biogenesis protein PilO Machinery gene
  QQE96_RS07690 (QQE96_07770) pilP 515696..516214 (+) 519 WP_168520837.1 pilus assembly protein PilP Machinery gene
  QQE96_RS07695 (QQE96_07775) pilQ 516304..517950 (+) 1647 WP_372586270.1 type IV pilus secretin PilQ Machinery gene
  QQE96_RS07700 (QQE96_07780) aroK 518137..518658 (+) 522 WP_053309563.1 shikimate kinase AroK -
  QQE96_RS07705 (QQE96_07785) aroB 518683..519771 (+) 1089 WP_168520841.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22893.51 Da        Isoelectric Point: 10.0959

>NTDB_id=878097 QQE96_RS07680 WP_168520833.1 514521..515123(+) (pilN) [Vibrio aestuarianus subsp. francensis strain LC_Sco]
MLQRINLLPWREQQRAAHQRRFIGLTMLGVICALGIQWGIGLYLTDQAQYQQSRLDYLNHYIQKLDTQINALKLTEQEHK
ALLTRLSVVESLQRQRNTTTQLMNLMPQLIPEGVYIDKLKMQGQKIEVMGIGDSTARLATMLDNLEKSPLLAEVEMHSIV
HGKQRFGKAFQTFSLSFMFHAPTPNSRPSMESTNEGGRRG

Nucleotide


Download         Length: 603 bp        

>NTDB_id=878097 QQE96_RS07680 WP_168520833.1 514521..515123(+) (pilN) [Vibrio aestuarianus subsp. francensis strain LC_Sco]
ATGTTGCAGCGTATTAACTTATTGCCTTGGCGTGAACAACAAAGAGCGGCACATCAACGCCGCTTTATTGGACTGACGAT
GCTAGGAGTTATATGCGCGCTAGGTATTCAGTGGGGGATTGGTCTTTATCTTACGGATCAAGCGCAGTATCAGCAGTCGC
GTTTAGATTACCTCAATCACTATATTCAAAAGCTCGATACACAAATTAATGCTTTAAAACTGACCGAACAAGAACACAAG
GCATTATTGACTCGTTTGTCTGTGGTCGAGTCTTTACAGCGGCAGCGCAATACAACCACTCAGTTGATGAACCTGATGCC
GCAGTTGATACCTGAAGGCGTTTATATTGATAAGCTCAAAATGCAGGGGCAAAAAATTGAAGTGATGGGTATTGGTGATA
GTACAGCGCGCTTGGCCACTATGTTAGACAATTTAGAAAAATCACCGTTATTAGCTGAAGTGGAAATGCATTCGATAGTG
CATGGTAAGCAACGATTTGGTAAAGCGTTCCAGACATTTAGTCTCTCTTTTATGTTTCATGCTCCTACACCGAATAGCCG
CCCTTCAATGGAGAGCACCAATGAGGGAGGTCGGCGTGGTTAG

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(102-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

64.804

89.5

0.58
  pilN Vibrio cholerae strain A1552

60

92.5

0.555