Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   QQE96_RS07675 Genome accession   NZ_CP133987
Coordinates   513521..514537 (+) Length   338 a.a.
NCBI ID   WP_168520831.1    Uniprot ID   -
Organism   Vibrio aestuarianus subsp. francensis strain LC_Sco     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 508521..519537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQE96_RS07660 (QQE96_07740) - 509021..509749 (-) 729 WP_168520824.1 redoxin family protein -
  QQE96_RS07665 (QQE96_07745) oxyR 509908..510798 (+) 891 WP_168520826.1 DNA-binding transcriptional regulator OxyR -
  QQE96_RS07670 (QQE96_07750) - 510858..513377 (-) 2520 WP_168520829.1 penicillin-binding protein 1A -
  QQE96_RS07675 (QQE96_07755) pilM 513521..514537 (+) 1017 WP_168520831.1 type IV pilus assembly protein PilM Machinery gene
  QQE96_RS07680 (QQE96_07760) pilN 514521..515123 (+) 603 WP_168520833.1 PilN domain-containing protein Machinery gene
  QQE96_RS07685 (QQE96_07765) pilO 515116..515709 (+) 594 WP_168520835.1 type 4a pilus biogenesis protein PilO Machinery gene
  QQE96_RS07690 (QQE96_07770) pilP 515696..516214 (+) 519 WP_168520837.1 pilus assembly protein PilP Machinery gene
  QQE96_RS07695 (QQE96_07775) pilQ 516304..517950 (+) 1647 WP_372586270.1 type IV pilus secretin PilQ Machinery gene
  QQE96_RS07700 (QQE96_07780) aroK 518137..518658 (+) 522 WP_053309563.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 37863.59 Da        Isoelectric Point: 8.0154

>NTDB_id=878096 QQE96_RS07675 WP_168520831.1 513521..514537(+) (pilM) [Vibrio aestuarianus subsp. francensis strain LC_Sco]
MGKSLVTGIDIGHHSIKAVVLKPVNGSYALVGYNELPITEDIFFDNHTLNYQKIVKKLKELRKGLPLFSHKVAVSVPDNA
VISKVLQIDSSLDVREKEFAIYQAFSHQSPFPMQELSLDFVKVAEKKHSRGPTEHYQVYAIRKEVVDCRVLAMQKAGFTP
INIDMQAHSLLHIWQLASQTNQCNDWLLMDVGYTQITLCIDFSDKAPFHKTIALGCQWLEQKSDAHGANAKPVDNAERFI
DQLIERLQRQIQLFTSINGAGRLSGVWLCGGGASTPKLAAEITYRLNLQCEILNPFSLFDLQASPKKGMLTEGARFSTAA
GIALRGIEWWENRHVAAY

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=878096 QQE96_RS07675 WP_168520831.1 513521..514537(+) (pilM) [Vibrio aestuarianus subsp. francensis strain LC_Sco]
ATGGGTAAATCATTAGTTACGGGTATAGATATTGGCCACCATAGTATTAAAGCGGTGGTCTTAAAGCCAGTGAATGGGTC
GTATGCACTGGTTGGGTACAACGAATTACCTATTACTGAAGACATTTTCTTCGATAACCACACACTGAATTATCAGAAAA
TTGTAAAGAAACTCAAAGAACTAAGAAAGGGGTTACCGTTATTTAGTCATAAAGTCGCAGTTTCAGTACCGGACAATGCA
GTAATTAGCAAAGTATTACAAATAGATAGCTCTCTTGATGTTCGTGAAAAAGAGTTCGCTATTTATCAGGCATTTTCTCA
TCAATCTCCTTTTCCAATGCAAGAGTTAAGTCTCGATTTTGTCAAAGTAGCAGAAAAAAAACATTCTCGGGGTCCAACAG
AGCATTATCAAGTATATGCAATCCGCAAAGAAGTGGTGGATTGCCGTGTTTTAGCTATGCAAAAAGCGGGCTTTACACCC
ATCAATATCGACATGCAAGCACACAGTTTATTACACATTTGGCAGTTAGCCAGTCAAACCAATCAGTGCAACGATTGGCT
ACTCATGGACGTGGGCTATACGCAAATAACGTTGTGTATCGACTTTAGTGATAAGGCTCCTTTTCATAAAACCATTGCAC
TTGGTTGTCAGTGGTTGGAACAGAAATCGGATGCGCATGGTGCTAACGCCAAACCAGTGGATAACGCAGAGCGATTTATT
GATCAGTTAATTGAGCGCTTACAAAGACAGATTCAACTGTTTACGTCAATCAATGGCGCGGGTCGACTATCGGGGGTTTG
GCTTTGCGGTGGAGGAGCAAGCACTCCAAAATTAGCCGCTGAAATTACTTACCGTTTGAATCTTCAATGTGAAATTTTAA
ACCCCTTTTCTTTGTTTGATCTGCAAGCTTCTCCGAAAAAGGGAATGCTAACTGAAGGGGCGCGTTTTAGTACAGCCGCT
GGCATAGCACTGCGAGGCATTGAGTGGTGGGAGAATCGGCATGTTGCAGCGTATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio cholerae strain A1552

61.243

100

0.612
  pilM Vibrio campbellii strain DS40M4

48.657

99.112

0.482