Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   RIM74_RS03555 Genome accession   NZ_CP133955
Coordinates   697213..697935 (+) Length   240 a.a.
NCBI ID   WP_012677660.1    Uniprot ID   A0AAW3GL08
Organism   Streptococcus equi subsp. equi strain HTP133     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 692213..702935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM74_RS03535 (RIM74_03535) - 693522..694943 (+) 1422 WP_012679829.1 glycoside hydrolase family 1 protein -
  RIM74_RS03540 (RIM74_03540) - 695128..695943 (-) 816 WP_042357070.1 TIGR03943 family putative permease subunit -
  RIM74_RS03545 (RIM74_03545) - 695943..696845 (-) 903 WP_012677658.1 permease -
  RIM74_RS03550 (RIM74_03550) - 696886..697041 (-) 156 WP_012515968.1 SPJ_0845 family protein -
  RIM74_RS03555 (RIM74_03555) vicR 697213..697935 (+) 723 WP_012677660.1 response regulator transcription factor Regulator
  RIM74_RS03560 (RIM74_03560) pnpS 697919..699244 (+) 1326 WP_012679827.1 two-component system histidine kinase PnpS -
  RIM74_RS03565 (RIM74_03565) - 699403..700275 (+) 873 WP_042357068.1 substrate-binding domain-containing protein -
  RIM74_RS03570 (RIM74_03570) pstC 700345..701208 (+) 864 WP_012679825.1 phosphate ABC transporter permease subunit PstC -
  RIM74_RS03575 (RIM74_03575) pstA 701201..702016 (+) 816 WP_317583019.1 phosphate ABC transporter permease PstA -
  RIM74_RS03580 (RIM74_03580) pstB 702018..702770 (+) 753 WP_012679823.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 28111.54 Da        Isoelectric Point: 6.1653

>NTDB_id=877863 RIM74_RS03555 WP_012677660.1 697213..697935(+) (vicR) [Streptococcus equi subsp. equi strain HTP133]
MTKRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGIEVCKRLRAKGSKTPIMMV
SAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEAEISGDGEERREPFYTMSQLRLYPERHEVYKDKELLPL
TPKEYELLLYLMKHPNMTLTRERLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFKELKNDRTS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=877863 RIM74_RS03555 WP_012677660.1 697213..697935(+) (vicR) [Streptococcus equi subsp. equi strain HTP133]
ATGACAAAACGAGTATTATTAGTAGATGATGAGGAGCCTATCTTAAGGCTACTGGATTATCACTTGGCCAAGGAGGGCTT
TGTGACAGAGATGGTAACAGATGGCCGTACTGCCTTGGCATTAGCTGAAAGAGAACCTTATGATTTTATTGTGTTAGATA
TTATGCTGCCGCAATTAGACGGTATCGAGGTCTGCAAAAGGCTTCGTGCTAAGGGAAGCAAAACCCCAATTATGATGGTT
TCTGCTAAAAGTGATGAATTTGACAAGGTTTTGGCTTTGGAGCTGGGGGCAGATGATTATGTGACCAAGCCCTTTAGTCC
TAGAGAATTATTAGCGCGTGTCAAGGCTATTTTAAGGCGTACTGAAGCAGAGATTTCTGGTGATGGTGAAGAGCGTCGTG
AGCCTTTTTATACGATGAGTCAATTGCGTCTGTACCCAGAGCGACATGAGGTCTATAAGGACAAGGAGCTATTGCCGTTA
ACCCCAAAGGAATATGAGCTACTGCTCTATCTCATGAAGCACCCTAATATGACCCTGACGCGTGAGCGGCTATTAGAGCG
TATCTGGGGTTATGACTTTGGCCAAGAAACACGTCTGGTAGACGTTCATATTGGCAAGCTCAGAGAAAAAATCGAGGACA
ATCCTAAGGCGCCTCAGTATATTCAAACCATTCGCGGCTATGGCTACAAATTTAAGGAGCTAAAGAATGATAGGACATCT
TAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(158-231)

Response regulator receiver domain (Response_reg)

(5-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

52.155

96.667

0.504
  micA Streptococcus pneumoniae Cp1015

50

95.833

0.479
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.017

97.5

0.429
  covR Streptococcus salivarius strain HSISS4

40.773

97.083

0.396