Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   RIM63_RS06905 Genome accession   NZ_CP133952
Coordinates   1437479..1438201 (-) Length   240 a.a.
NCBI ID   WP_012677660.1    Uniprot ID   A0AAW3GL08
Organism   Streptococcus equi subsp. zooepidemicus strain HT321     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1432479..1443201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM63_RS06880 (RIM63_06880) pstB 1432644..1433396 (-) 753 WP_317583476.1 phosphate ABC transporter ATP-binding protein PstB -
  RIM63_RS06885 (RIM63_06885) pstA 1433398..1434213 (-) 816 WP_012679824.1 phosphate ABC transporter permease PstA -
  RIM63_RS06890 (RIM63_06890) pstC 1434206..1435069 (-) 864 WP_317583479.1 phosphate ABC transporter permease subunit PstC -
  RIM63_RS06895 (RIM63_06895) - 1435139..1436011 (-) 873 WP_317583480.1 substrate-binding domain-containing protein -
  RIM63_RS06900 (RIM63_06900) pnpS 1436170..1437495 (-) 1326 WP_317583482.1 two-component system histidine kinase PnpS -
  RIM63_RS06905 (RIM63_06905) vicR 1437479..1438201 (-) 723 WP_012677660.1 response regulator transcription factor Regulator
  RIM63_RS06910 (RIM63_06910) - 1438373..1438528 (+) 156 WP_200831618.1 SPJ_0845 family protein -
  RIM63_RS06915 (RIM63_06915) - 1438569..1439471 (+) 903 WP_021320980.1 permease -
  RIM63_RS06920 (RIM63_06920) - 1439471..1440286 (+) 816 WP_282719057.1 TIGR03943 family putative permease subunit -
  RIM63_RS06925 (RIM63_06925) - 1440472..1441893 (-) 1422 WP_043053271.1 glycoside hydrolase family 1 protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 28111.54 Da        Isoelectric Point: 6.1653

>NTDB_id=877769 RIM63_RS06905 WP_012677660.1 1437479..1438201(-) (vicR) [Streptococcus equi subsp. zooepidemicus strain HT321]
MTKRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGIEVCKRLRAKGSKTPIMMV
SAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEAEISGDGEERREPFYTMSQLRLYPERHEVYKDKELLPL
TPKEYELLLYLMKHPNMTLTRERLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFKELKNDRTS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=877769 RIM63_RS06905 WP_012677660.1 1437479..1438201(-) (vicR) [Streptococcus equi subsp. zooepidemicus strain HT321]
ATGACAAAACGAGTATTATTAGTAGATGATGAGGAGCCTATCTTAAGGCTATTGGATTATCACTTGGCTAAGGAGGGCTT
TGTGACAGAGATGGTAACAGATGGCCGCACTGCCTTGGCATTAGCTGAAAGAGAGCCTTATGATTTTATTGTTTTAGATA
TTATGCTGCCGCAATTAGACGGTATCGAGGTCTGTAAAAGGCTTCGTGCTAAGGGAAGCAAAACACCAATTATGATGGTT
TCTGCTAAAAGTGATGAATTTGACAAGGTTTTGGCTTTGGAACTGGGGGCAGATGATTATGTGACCAAGCCCTTTAGTCC
TAGAGAATTATTAGCGCGTGTCAAGGCTATTTTAAGGCGTACTGAAGCAGAGATTTCTGGTGATGGTGAGGAGCGTCGTG
AGCCTTTTTATACGATGAGTCAATTGCGTCTGTACCCAGAGCGACATGAGGTCTATAAGGACAAGGAGCTATTGCCGTTA
ACCCCAAAGGAATATGAGCTACTGCTCTATCTCATGAAGCACCCTAATATGACCCTGACGCGTGAGCGGCTATTAGAGCG
TATCTGGGGTTATGACTTTGGCCAAGAAACACGTCTGGTAGACGTTCATATTGGCAAGCTCAGAGAAAAAATTGAGGACA
ATCCTAAGGCGCCTCAGTATATTCAAACCATTCGCGGCTATGGATACAAATTTAAGGAGCTAAAGAATGATAGGACATCT
TAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(158-231)

Response regulator receiver domain (Response_reg)

(5-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

52.155

96.667

0.504
  micA Streptococcus pneumoniae Cp1015

50

95.833

0.479
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.017

97.5

0.429
  covR Streptococcus salivarius strain HSISS4

40.773

97.083

0.396