Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaH   Type   Regulator
Locus tag   RIM63_RS04880 Genome accession   NZ_CP133952
Coordinates   1011593..1012903 (+) Length   436 a.a.
NCBI ID   WP_317585160.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain HT321     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1006593..1017903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM63_RS04865 (RIM63_04865) phoU 1007081..1007734 (+) 654 WP_012678018.1 phosphate signaling complex protein PhoU -
  RIM63_RS04870 (RIM63_04870) - 1007968..1010505 (+) 2538 WP_206158612.1 M1 family metallopeptidase -
  RIM63_RS04875 (RIM63_04875) ciaR 1010926..1011600 (+) 675 WP_037578348.1 response regulator transcription factor Regulator
  RIM63_RS04880 (RIM63_04880) ciaH 1011593..1012903 (+) 1311 WP_317585160.1 HAMP domain-containing sensor histidine kinase Regulator
  RIM63_RS04885 (RIM63_04885) - 1013288..1013716 (+) 429 WP_317585162.1 hypothetical protein -
  RIM63_RS04890 (RIM63_04890) - 1013943..1014338 (+) 396 WP_115250909.1 DUF1433 domain-containing protein -
  RIM63_RS04895 (RIM63_04895) - 1014338..1014583 (+) 246 WP_317585164.1 hypothetical protein -
  RIM63_RS04900 (RIM63_04900) - 1014602..1015000 (+) 399 WP_231871354.1 hypothetical protein -
  RIM63_RS04905 (RIM63_04905) - 1015003..1016196 (+) 1194 WP_317585168.1 hypothetical protein -
  RIM63_RS04910 (RIM63_04910) - 1016193..1016585 (+) 393 WP_317583847.1 hypothetical protein -
  RIM63_RS04915 (RIM63_04915) - 1016604..1016888 (+) 285 WP_317583846.1 hypothetical protein -
  RIM63_RS04920 (RIM63_04920) rpsT 1017098..1017346 (-) 249 WP_012678006.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 436 a.a.        Molecular weight: 49660.31 Da        Isoelectric Point: 9.5548

>NTDB_id=877763 RIM63_RS04880 WP_317585160.1 1011593..1012903(+) (ciaH) [Streptococcus equi subsp. zooepidemicus strain HT321]
MNKLKKELLSDNYTHFFHFFAIFTGIFVVMTIIILQIMRFSVYSTVDSSLISVGQNASNYANRTMARISSFYFDAENNLI
QALPELEASKSLGSSTTNMDIILFSANGTILNSFDAFSNYQSFRLDKSQLNNIVTTQLMNFYGQKEKYHTLTVKVHIKNY
PAVAYMMAVVNVQQLDTANERYEQIIIMVMIVFWLISILASIYLAKWSRKPIMESYAKQKMFVENASHELRTPLAVLQNR
LESLFRKPNETILDNSEHIASSLDEVRNMRILTTNLLNLARRDDGIKPQLVDIDAAFFDTVFENYQLVAEESGKQFISAN
QINRPLKTDKALLKQLMTILFDNAIKYTDHNGVVEVKVRTTDKHLLISVIDNGPGIKDDDKKKIFDRFYRVDKARTRQKG
GFGLGLALAQQIVTSLKGTITVSDNKPTGAIFEVKL

Nucleotide


Download         Length: 1311 bp        

>NTDB_id=877763 RIM63_RS04880 WP_317585160.1 1011593..1012903(+) (ciaH) [Streptococcus equi subsp. zooepidemicus strain HT321]
ATGAATAAACTAAAAAAAGAATTATTGTCCGATAATTATACACATTTTTTTCATTTCTTTGCTATTTTTACAGGCATTTT
TGTTGTCATGACTATCATTATTTTGCAAATCATGAGGTTTAGTGTCTATTCCACAGTAGACAGCAGTCTCATTTCGGTCG
GTCAAAATGCCAGCAACTATGCCAATAGGACCATGGCGAGAATATCTTCCTTTTATTTTGATGCAGAAAATAACCTTATT
CAGGCTCTTCCTGAATTGGAAGCGTCAAAATCACTTGGCTCCTCCACCACTAATATGGATATTATTTTATTTAGTGCCAA
TGGGACGATATTGAATTCCTTTGATGCCTTCTCCAATTACCAAAGCTTTCGTTTAGACAAAAGTCAGCTTAATAACATTG
TCACAACACAGCTGATGAATTTTTATGGGCAAAAGGAGAAATACCATACCCTAACCGTTAAGGTCCACATCAAAAACTAT
CCGGCAGTGGCTTATATGATGGCAGTGGTTAATGTTCAGCAACTGGATACTGCCAATGAGCGCTATGAACAGATTATTAT
CATGGTTATGATTGTCTTTTGGTTAATTTCGATTTTAGCCAGCATTTATTTAGCGAAATGGAGCAGAAAGCCAATTATGG
AGAGCTATGCCAAGCAAAAAATGTTTGTAGAAAATGCCAGTCATGAGCTTAGGACTCCTTTGGCTGTGCTGCAAAATCGT
TTGGAATCACTGTTTAGAAAGCCTAACGAAACCATTTTAGATAATAGCGAGCATATTGCGTCAAGCCTAGATGAGGTTCG
TAATATGAGAATATTAACCACTAATTTGTTGAATTTAGCTAGACGCGATGATGGGATCAAGCCGCAGCTAGTTGATATTG
ATGCAGCCTTTTTTGATACTGTTTTTGAAAATTATCAATTAGTTGCAGAAGAGTCAGGCAAGCAGTTTATCTCAGCTAAT
CAGATCAATAGGCCCTTAAAGACGGATAAGGCTTTGCTCAAGCAACTGATGACCATTTTGTTTGATAATGCGATCAAATA
CACTGATCATAACGGTGTGGTTGAGGTCAAGGTTAGAACGACCGATAAGCATTTATTGATTTCTGTTATTGATAATGGCC
CAGGGATCAAGGACGATGATAAGAAAAAGATTTTTGATCGCTTTTACCGAGTGGATAAGGCAAGGACACGCCAAAAAGGA
GGCTTTGGACTCGGATTGGCCTTAGCGCAGCAGATCGTTACCTCATTAAAAGGAACGATTACTGTCAGCGATAATAAGCC
TACCGGCGCTATTTTTGAGGTAAAATTATAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(329-436)

His Kinase A (phospho-acceptor) domain (HisKA)

(220-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

58.124

100

0.583
  ciaH Streptococcus pneumoniae Rx1

51.147

100

0.511
  ciaH Streptococcus pneumoniae D39

51.147

100

0.511
  ciaH Streptococcus pneumoniae R6

51.147

100

0.511
  ciaH Streptococcus pneumoniae TIGR4

51.147

100

0.511